big data

大数据
  • 文章类型: Journal Article
    目的:放疗指南的依从性对于维持治疗质量和一致性至关重要,特别是在大多数治疗发生的非试验患者环境中。该研究旨在评估指南更改对治疗计划实践的影响,并将手动注册数据的准确性与治疗计划数据进行比较。
    方法:这项研究利用了DBCGRTNation队列,丹麦的乳腺癌放射治疗数据集,评估2008年至2016年对指南的遵守情况。该队列包括7448例高危乳腺癌患者。国家准则的变化包括,分馏,引入呼吸门控,乳腺内淋巴结的照射,在描绘实践中使用同时集成的增强技术和左前下降冠状动脉的纳入。结构名称映射的方法,侧向性检测,检测人群平均肺容积的时间变化,和剂量评估进行了介绍和应用。从丹麦乳腺癌数据库获得手动登记的治疗特征数据用于比较。
    结果:研究发现,丹麦放疗中心立即且一致地遵守指南变更。指南实施之前的治疗实践已记录在案,并显示各中心之间存在差异。对于某些措施,手动注册数据与实际治疗计划数据之间的差异高达10%。
    结论:可以在常规治疗数据中检测到国家指南的变化,具有高度的合规性和较短的实施时间。与医疗登记数据相比,从治疗计划数据文件提取的数据提供了更准确和详细的治疗和指南依从性表征。
    OBJECTIVE: Guideline adherence in radiotherapy is crucial for maintaining treatment quality and consistency, particularly in non-trial patient settings where most treatments occur. The study aimed to assess the impact of guideline changes on treatment planning practices and compare manual registry data accuracy with treatment planning data.
    METHODS: This study utilised the DBCG RT Nation cohort, a collection of breast cancer radiotherapy data in Denmark, to evaluate adherence to guidelines from 2008 to 2016. The cohort included 7448 high-risk breast cancer patients. National guideline changes included, fractionation, introduction of respiratory gating, irradiation of the internal mammary lymph nodes, use of the simultaneous integrated boost technique and inclusion of the Left Anterior Descending coronary artery in delineation practice. Methods for structure name mapping, laterality detection, detection of temporal changes in population mean lung volume, and dose evaluation were presented and applied. Manually registered treatment characteristic data was obtained from the Danish Breast Cancer Database for comparison.
    RESULTS: The study found immediate and consistent adherence to guideline changes across Danish radiotherapy centres. Treatment practices before guideline implementation were documented and showed a variation among centres. Discrepancies between manual registry data and actual treatment planning data were as high as 10% for some measures.
    CONCLUSIONS: National guideline changes could be detected in the routine treatment data, with a high degree of compliance and short implementation time. Data extracted from treatment planning data files provides a more accurate and detailed characterisation of treatments and guideline adherence than medical register data.
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  • 文章类型: Journal Article
    数字技术的变化,不断增加的数据量,方法的进步有可能释放通过卫生专业人员教育产生的大数据的价值。再加上这种潜力是合理的担忧,即如何以限制自治的方式使用或滥用数据。股本,或伤害利益相关者。这一共识声明旨在通过预测参与大数据的道德要求以及潜在的风险和挑战来解决这些问题。认识到大数据奖学金的广泛和不断发展的范围,我们专注于框架和从事研究的基础问题。我们将我们的建议放在大数据的背景下,这些大数据是通过在卫生专业人员的教育和培训的连续过程中以及在这些阶段中共享数据而创建的。最终,该声明的目标是支持大数据研究的信任和质量文化,以实现其对卫生专业教育(HPE)和社会健康的承诺。基于专家共识和文献综述,我们在(1)通过研究构建奖学金和研究中报告了19项建议,(2)考虑到独特的道德规范,(3)参与利益相关者的数据共享协作治理,(4)数据共享流程最佳实践,(5)知识翻译的重要性,(6)通过多学科合作提高奖学金的质量。根据2022年渥太华会议与会者的反馈和随后的公众参与,对建议进行了修改和完善。采纳这些建议可以帮助HPE学者在道德上分享数据,并参与高影响力的大数据奖学金。这反过来可以帮助该领域实现最终目标:高质量的教育,导致高质量的医疗保健。
    Changes in digital technology, increasing volume of data collection, and advances in methods have the potential to unleash the value of big data generated through the education of health professionals. Coupled with this potential are legitimate concerns about how data can be used or misused in ways that limit autonomy, equity, or harm stakeholders. This consensus statement is intended to address these issues by foregrounding the ethical imperatives for engaging with big data as well as the potential risks and challenges. Recognizing the wide and ever evolving scope of big data scholarship, we focus on foundational issues for framing and engaging in research. We ground our recommendations in the context of big data created through data sharing across and within the stages of the continuum of the education and training of health professionals. Ultimately, the goal of this statement is to support a culture of trust and quality for big data research to deliver on its promises for health professions education (HPE) and the health of society. Based on expert consensus and review of the literature, we report 19 recommendations in (1) framing scholarship and research through research, (2) considering unique ethical practices, (3) governance of data sharing collaborations that engage stakeholders, (4) data sharing processes best practices, (5) the importance of knowledge translation, and (6) advancing the quality of scholarship through multidisciplinary collaboration. The recommendations were modified and refined based on feedback from the 2022 Ottawa Conference attendees and subsequent public engagement. Adoption of these recommendations can help HPE scholars share data ethically and engage in high impact big data scholarship, which in turn can help the field meet the ultimate goal: high-quality education that leads to high-quality healthcare.
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  • 文章类型: Journal Article
    重症医学的发展离不开多元化的监测数据。重症监护医学自诞生以来就与数据紧密结合。重症监护研究需要一种综合方法,包括重症疾病的复杂性以及可以使其成为可能的计算技术和算法。考虑到大数据在重症监护中应用标准化的需要,中国卫生信息与健康医疗大数据学会重症医学分会,标准委员会已召集专家组,秘书小组和外部审计专家组制定《中国专家关于重症监护大数据应用的共识》(2022年)。这一共识在以下五个部分提出了29条建议:重症监护大数据的概念,重要的科学问题,数据库的标准和原则,解决大数据问题的方法论,重症监护大数据的临床应用及安全性考量[J].共识小组认为,这一共识是大数据在重症监护领域应用的第一步。应进行更多的探索和基于大数据的回顾性研究,以提高重症监护领域基于大数据的模型的安全性和可靠性。
    The development of intensive care medicine is inseparable from the diversified monitoring data. Intensive care medicine has been closely integrated with data since its birth. Critical care research requires an integrative approach that embraces the complexity of critical illness and the computational technology and algorithms that can make it possible. Considering the need of standardization of application of big data in intensive care, Intensive Care Medicine Branch of China Health Information and Health Care Big Data Society, Standard Committee has convened expert group, secretary group and the external audit expert group to formulate Chinese Experts\' Consensus on the Application of Intensive Care Big Data (2022). This consensus makes 29 recommendations on the following five parts: Concept of intensive care big data, Important scientific issues, Standards and principles of database, Methodology in solving big data problems, Clinical application and safety consideration of intensive care big data. The consensus group believes this consensus is the starting step of application big data in the field of intensive care. More explorations and big data based retrospective research should be carried out in order to enhance safety and reliability of big data based models of critical care field.
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  • 文章类型: English Abstract
    With the development and progress of science and technology, the diagnosis and treatment of intensive care medicine has incorporated monitoring tools and treatment methods. These multi-source monitoring data have the characteristics of large-scale, multi-heterogeneous, variably dynamic, high-speed and real-time acquisition, which are relatively underutilized in current clinical treatment. As the state of illness of critically ill patients changes rapidly, the timely processing and integration of multiple data becomes crucial. Therefore, intensive care big data has emerged in recent years. In order to promote the standardized development of intensive care big data in China, based on the relevant literature and guidelines at home and abroad, the Intensive Care Medicine Branch of China Health Information and Health Care Big Data Society organized experts to discuss the concept, significance and necessity of intensive care big data; clinical scientific issues of clinical research on intensive care big data; the establishment, standards and principles of intensive care big database; ways and methods to solve big data problems in intensive care medicine; clinical application of intensive care big data. This consensus was developed for clinicians and researchers working on big data in intensive care.
    随着科技的发展与进步,重症医学的诊疗融入了越来越多的监测手段与治疗方法。这些多元化的监测数据具有实时性、连续性、动态性、多源性等特点,当前临床诊疗对其利用程度相对较低。重症患者病情瞬息万变,对多元数据的及时处理与整合变得至关重要。因此,近年来重症大数据应运而生。为了更好推动重症大数据在中国的规范化发展,在借鉴国内外相关文献和指南的基础上,中国卫生信息与健康医疗大数据学会重症医学分会组织专家就本共识包括重症大数据的概念、意义与必要性;重症大数据临床研究关注的临床科学问题;重症大数据库的建立、标准与原则;重症医学大数据问题解决途径与方法;重症大数据的临床应用五个方面制定了本共识,为临床医生及致力于重症大数据的科研工作者提供参考。.
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  • 文章类型: English Abstract
    Cancer is a public health and social problem to which great attention should be attached. Not only are there a large number of cancer patients in China, but great differences also exist in etiology, epidemiology, disease spectrum, and treatment between China and western countries. Therefore, tumor-related data in China has its own characteristics. Full reference to the data of western countries cannot accurately reflect the real situation of cancer prevention and treatment in China. If we can integrate, process and analyze Chinese data, and find rules in specific etiology, incidence, drug sensitivity and prognosis, it will play an important role in the formulation of health policy, medical research and disease prevention. The Society of Cancer Big Data and Real World Study of China Anti-Cancer Association organized multidisciplinary experts, combined with domestic and foreign literature and clinical practice, after repeated discussion and revision, finished this consensus including background, analysis and management, direction planning and operation flow, basic design, quality control standards, evidence level classification, data security and privacy standards of big data and real world study. The aim is to take full advantages of Chinese cancer big data to carry out high-quality real world study, and better promote the prevention and treatment of cancer in China.
    肿瘤是需要高度重视的公共卫生问题及社会问题。中国肿瘤患者不仅数量众多,而且在病因、流行病学、疾病谱、治疗方式等方面与西方国家存在较大差异。因此,中国肿瘤相关数据具有自己的特点,如果完全参照西方国家数据,则不能正确反映中国肿瘤防治的真实现状。若能整合、处理、分析中国数据,并在特有病因、发病率、药物敏感性、预后等方面找到规律,将对制定卫生政策、医学研究、疾病预防等起到重大作用。中国抗癌协会肿瘤大数据与真实世界研究专业委员会组织多学科专家,结合国内外文献和临床实践,经过反复讨论修改,基于肿瘤大数据与真实世界研究的背景、分析与管理、方向规划与操作流程、基本设计、质量控制标准、证据级别分类、数据安全与隐私标准等方面,最终形成《肿瘤大数据与真实世界研究中国专家共识(2022版)》,旨在发挥中国肿瘤大数据的优势,开展高质量的真实世界研究,更好地推进中国肿瘤防治工作。.
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  • 文章类型: Journal Article
    谱聚类是一种强大的策略,通过基于相似性对冗余质谱进行分组来最小化冗余质谱,目的是从相同的重复测量的分析物形成质谱组。每个这样的接近相同的光谱组可以由其用于下游处理的所谓的一致光谱来表示。尽管已经对频谱聚类的几种算法进行了充分的基准测试和测试,很少评估共识谱生成步骤的影响。这里,我们提出了常见共识谱算法的实现和基准,包括频谱平均,光谱分级,最相似的光谱,和最佳识别光谱。我们已经使用两种不同的聚类算法(光谱聚类和MaRaCluster)分析了不同的公共数据集,以评估共识光谱生成程序如何影响下游肽识别。BEST和BIN方法被认为是产生共识谱的最可靠方法,包括具有翻译后修饰(PTM)如磷酸化的数据集。本研究的所有源代码和数据均可在GitHub上免费获得,网址为https://github.com/statisticalbietrics/representative-spectrans-benchmark。
    Spectrum clustering is a powerful strategy to minimize redundant mass spectra by grouping them based on similarity, with the aim of forming groups of mass spectra from the same repeatedly measured analytes. Each such group of near-identical spectra can be represented by its so-called consensus spectrum for downstream processing. Although several algorithms for spectrum clustering have been adequately benchmarked and tested, the influence of the consensus spectrum generation step is rarely evaluated. Here, we present an implementation and benchmark of common consensus spectrum algorithms, including spectrum averaging, spectrum binning, the most similar spectrum, and the best-identified spectrum. We have analyzed diverse public data sets using two different clustering algorithms (spectra-cluster and MaRaCluster) to evaluate how the consensus spectrum generation procedure influences downstream peptide identification. The BEST and BIN methods were found the most reliable methods for consensus spectrum generation, including for data sets with post-translational modifications (PTM) such as phosphorylation. All source code and data of the present study are freely available on GitHub at https://github.com/statisticalbiotechnology/representative-spectra-benchmark.
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  • 文章类型: Journal Article
    公开可用的化合物和生物活性数据库为生命科学研究和药物设计中的数据驱动应用提供了必要的基础。通过分析几个生物活性库,我们发现复合和目标覆盖率存在差异,主张联合使用多个来源的数据.使用来自ChEMBL的数据,PubChem,IUPHAR/BPS,BindingDB,和探针和药物,我们收集了一个共识数据集,重点是对人类大分子靶标具有生物活性的小分子。这样可以改善复合空间和目标的覆盖范围,以及结构和生物活性数据的自动比较和管理,以揭示潜在的错误条目并增加信心。共识数据集包括超过110万种化合物,超过1090万个生物活性数据点,并附有测定类型和生物活性置信度的注释。为药物设计和化学基因组学中的计算应用提供了有用的集合。
    Publicly available compound and bioactivity databases provide an essential basis for data-driven applications in life-science research and drug design. By analyzing several bioactivity repositories, we discovered differences in compound and target coverage advocating the combined use of data from multiple sources. Using data from ChEMBL, PubChem, IUPHAR/BPS, BindingDB, and Probes & Drugs, we assembled a consensus dataset focusing on small molecules with bioactivity on human macromolecular targets. This allowed an improved coverage of compound space and targets, and an automated comparison and curation of structural and bioactivity data to reveal potentially erroneous entries and increase confidence. The consensus dataset comprised of more than 1.1 million compounds with over 10.9 million bioactivity data points with annotations on assay type and bioactivity confidence, providing a useful ensemble for computational applications in drug design and chemogenomics.
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  • 文章类型: Journal Article
    心血管疾病是发病率和死亡率的主要原因,需要研究以改善诊断,并发现和测试新的预防和治疗疗法,所有这些都需要概括人类疾病的实验模型。将基础科学成果转化为临床实践是一项具有挑战性的任务,特别是对于复杂的疾病,如心血管疾病,这通常是由多种风险因素和合并症引起的。这种困难可能会导致一些人质疑动物研究的价值,引用翻译的“死亡之谷”,这在很大程度上反映了这样一个事实,即对啮齿动物的研究很难转化为人类。这也受到新的影响,人类来源的体外模型可以概括疾病过程的各个方面。然而,认为动物模型并不代表翻译途径的重要步骤是错误的,因为它们确实提供了对疾病机制的重要病理生理学见解,特别是在器官和系统水平上。虽然干细胞衍生的人体模型有可能成为测试新药毒性和有效性的关键,我们需要现实一点,并仔细验证所有新的类似人类的疾病模型。在这份立场文件中,我们强调了最近在减少心血管研究动物数量方面的进展,从干细胞衍生模型到心脏特性的原位建模,基于大型数据集的生物信息学模型,和最先进的动物模型,显示在心血管疾病患者中观察到的临床相关特征。我们的目标是提供一个指导,以帮助研究人员在他们的实验设计中,将实验结果转化为临床常规,reduction,和细化(3R)作为指导概念。
    Cardiovascular diseases represent a major cause of morbidity and mortality, necessitating research to improve diagnostics, and to discover and test novel preventive and curative therapies, all of which warrant experimental models that recapitulate human disease. The translation of basic science results to clinical practice is a challenging task, in particular for complex conditions such as cardiovascular diseases, which often result from multiple risk factors and comorbidities. This difficulty might lead some individuals to question the value of animal research, citing the translational \'valley of death\', which largely reflects the fact that studies in rodents are difficult to translate to humans. This is also influenced by the fact that new, human-derived in vitro models can recapitulate aspects of disease processes. However, it would be a mistake to think that animal models do not represent a vital step in the translational pathway as they do provide important pathophysiological insights into disease mechanisms particularly on an organ and systemic level. While stem cell-derived human models have the potential to become key in testing toxicity and effectiveness of new drugs, we need to be realistic, and carefully validate all new human-like disease models. In this position paper, we highlight recent advances in trying to reduce the number of animals for cardiovascular research ranging from stem cell-derived models to in situ modelling of heart properties, bioinformatic models based on large datasets, and state-of-the-art animal models, which show clinically relevant characteristics observed in patients with a cardiovascular disease. We aim to provide a guide to help researchers in their experimental design to translate bench findings to clinical routine taking the replacement, reduction, and refinement (3R) as a guiding concept.
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  • 文章类型: Journal Article
    BACKGROUND: Living Labs are user-centered, open innovation ecosystems based on a systematic user cocreation approach, which integrates research and innovation processes in real-life communities and settings. The Horizon 2020 Project VITALISE (Virtual Health and Wellbeing Living Lab Infrastructure) unites 19 partners across 11 countries. The project aims to harmonize Living Lab procedures and enable effective and convenient transnational and virtual access to key European health and well-being research infrastructures, which are governed by Living Labs. The VITALISE consortium will conduct joint research activities in the fields included in the care pathway of patients: rehabilitation, transitional care, and everyday living environments for older adults. This protocol focuses on health and well-being research in everyday living environments.
    OBJECTIVE: The main aim of this study is to cocreate and test a harmonized research protocol for developing big data-driven hybrid persona, which are hypothetical user archetypes created to represent a user community. In addition, the use and applicability of innovative technologies will be investigated in the context of various everyday living and Living Lab environments.
    METHODS: In phase 1, surveys and structured interviews will be used to identify the most suitable Living Lab methods, tools, and instruments for health-related research among VITALISE project Living Labs (N=10). A series of web-based cocreation workshops and iterative cowriting processes will be applied to define the initial protocols. In phase 2, five small-scale case studies will be conducted to test the cocreated research protocols in various real-life everyday living settings and Living Lab infrastructures. In phase 3, a cross-case analysis grounded on semistructured interviews will be conducted to identify the challenges and benefits of using the proposed research protocols. Furthermore, a series of cocreation workshops and the consensus seeking Delphi study process will be conducted in parallel to cocreate and validate the acceptance of the defined harmonized research protocols among wider Living Lab communities.
    RESULTS: As of September 30, 2021, project deliverables Ethics and safety manual and Living lab standard version 1 have been submitted to the European Commission review process. The study will be finished by March 2024.
    CONCLUSIONS: The outcome of this research will lead to harmonized procedures and protocols in the context of big data-driven hybrid persona development among health and well-being Living Labs in Europe and beyond. Harmonized protocols enable Living Labs to exploit similar research protocols, devices, hardware, and software for interventions and complex data collection purposes. Economies of scale and improved use of resources will speed up and improve research quality and offer novel possibilities for open data sharing, multidisciplinary research, and comparative studies beyond current practices. Case studies will also provide novel insights for implementing innovative technologies in the context of everyday Living Lab research.
    UNASSIGNED: DERR1-10.2196/34567.
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  • 文章类型: Journal Article
    The use of big data containing millions of primary care medical records provides an opportunity for rapid research to help inform patient care and policy decisions during the first and subsequent waves of the coronavirus disease 2019 (COVID-19) pandemic. Routinely collected primary care data have previously been used for national pandemic surveillance, quantifying associations between exposures and outcomes, identifying high risk populations, and examining the effects of interventions at scale, but there is no consensus on how to effectively conduct or report these data for COVID-19 research. A COVID-19 primary care database consortium was established in April 2020 and its researchers have ongoing COVID-19 projects in overlapping data sets with over 40 million primary care records in the United Kingdom that are variously linked to public health, secondary care, and vital status records. This consensus agreement is aimed at facilitating transparency and rigor in methodological approaches, and consistency in defining and reporting cases, exposures, confounders, stratification variables, and outcomes in relation to the pharmacoepidemiology of COVID-19. This will facilitate comparison, validation, and meta-analyses of research during and after the pandemic.
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