actionable mutations

可操作的突变
  • 文章类型: Journal Article
    UNASSIGNED:关于免疫检查点抑制剂(ICIs)加双重化疗(C)治疗晚期肺癌患者的数据很少,其肿瘤具有可操作的突变。我们试图深入了解该组合在该患者人群中与单独化疗有关的作用。
    UNASSIGNED:我们在加州大学国家癌症研究所的五个指定的综合癌症中心进行了一项回顾性研究。主要终点是无进展生存期(PFS)。次要终点包括总生存期(OS)和显著不良事件。还捕获了ICI后接受酪氨酸激酶抑制剂(TKI)的患者的不良事件。
    未经批准:共确定了246名患者,用C加ICI处理的170和用单独的C处理的76。驱动改变包括EGFR(54.9%),KRAS(32.9%),ALK(5.3%),HER2/ERBB2(2.9%),ROS1(1.2%),MET(1.2%),RET(0.8%),和BRAF非V600(0.8%)。总体PFS和OS风险比在1.12(95%置信区间0.83-1.51;p=0.472)和0.86(95%置信区间:0.60-1.24,p=0.429)不显著,分别。在突变亚组中没有观察到PFS或OS的显着差异。C加ICI组的3级或更高的不良事件较低。PFS和OS的多变量分析显示,表现状态(东部肿瘤协作组)得分为2,以前的TKI治疗与C加ICI的较差预后相关。
    未经证实:我们的研究表明,致癌驱动的非小细胞肺癌患者,主要是那些EGFR驱动的肿瘤,用TKI治疗后不应该接受C加ICI。前瞻性临床试验的分析将提供有关ICI在该组患者中的作用的其他信息。
    UNASSIGNED: There is a paucity of data on immune checkpoint inhibitors (ICIs) plus doublet chemotherapy (C) in patients with advanced lung cancer whose tumor harbors an actionable mutation. We sought to provide insight into the role of this combination in relation to chemotherapy alone in this patient population.
    UNASSIGNED: We conducted a retrospective study at the five University of California National Cancer Institute-designated Comprehensive Cancer Centers. The primary end point was progression-free survival (PFS). Secondary end points included overall survival (OS) and significant adverse events. Adverse events in patients who received a tyrosine kinase inhibitor (TKI) post-ICI were also captured.
    UNASSIGNED: A total of 246 patients were identified, 170 treated with C plus ICI and 76 treated with C alone. Driver alterations included EGFR (54.9%), KRAS (32.9%), ALK (5.3%), HER2/ERBB2 (2.9%), ROS1 (1.2%), MET (1.2%), RET (0.8%), and BRAF non-V600 (0.8%). The overall PFS and OS hazard ratios were not significant at 1.12 (95% confidence interval 0.83-1.51; p = 0.472) and 0.86 (95% confidence interval: 0.60-1.24, p = 0.429), respectively. No significant differences in PFS or OS were observed in the mutational subgroups. Grade 3 or greater adverse events were lower in the C plus ICI group. The multivariate analysis for PFS and OS revealed a performance status (Eastern Cooperative Oncology Group) score of 2, and previous TKI treatment was associated with poorer outcomes with C plus ICI.
    UNASSIGNED: Our study suggests that patients with oncogenic-driven NSCLC, primarily those with EGFR-driven tumors, treated with a TKI should not subsequently receive C plus ICI. Analysis from prospective clinical trials will provide additional information on the role of ICIs in this group of patients.
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  • 文章类型: Journal Article
    UNASSIGNED:结直肠癌(CRC)和肝转移(LM)患者多模式治疗后高耐药性和复发率的潜在机制仍然知之甚少。
    UNASSIGNED:我们评估了患者内异质性(IPH)的潜在翻译意义,包括原发性和匹配的转移性肿瘤内异质性(ITH)以及循环肿瘤DNA(ctDNA)变异性。
    UNASSIGNED:通过靶向下一代测序(NGS)分析了18例患者的122例多区域肿瘤和围手术期液体活检。
    UNASSIGNED:在原发性CRC和LM中,ITH患者的比例分别为53%和56%。而35%的患者在LM中存在新突变,表明时空肿瘤的演变和多区域分析的必要性。在56%的液体活检改变的患者中,在25%的患者中鉴定出cfDNA的从头突变,在CRC和LM中均检测不到。所有17例具有驱动改变的患者都带有分子靶向药物靶向的突变,批准或目前正在评估中。
    UNASSIGNED:我们的概念验证前瞻性研究为IPH的潜在临床优势提供了初步证据,并保证进行精确肿瘤学试验以评估IPH驱动的匹配疗法的临床效用。
    UNASSIGNED: The mechanisms underlying high drug resistance and relapse rates after multi-modal treatment in patients with colorectal cancer (CRC) and liver metastasis (LM) remain poorly understood.
    UNASSIGNED: We evaluate the potential translational implications of intra-patient heterogeneity (IPH) comprising primary and matched metastatic intratumor heterogeneity (ITH) coupled with circulating tumor DNA (ctDNA) variability.
    UNASSIGNED: A total of 122 multi-regional tumor and perioperative liquid biopsies from 18 patients were analyzed via targeted next-generation sequencing (NGS).
    UNASSIGNED: The proportion of patients with ITH were 53% and 56% in primary CRC and LM respectively, while 35% of patients harbored de novo mutations in LM indicating spatiotemporal tumor evolution and the necessity of multiregional analysis. Among the 56% of patients with alterations in liquid biopsies, de novo mutations in cfDNA were identified in 25% of patients, which were undetectable in both CRC and LM. All 17 patients with driver alterations harbored mutations targetable by molecularly targeted drugs, either approved or currently under evaluation.
    UNASSIGNED: Our proof-of-concept prospective study provides initial evidence on potential clinical superiority of IPH and warrants the conduction of precision oncology trials to evaluate the clinical utility of I PH-driven matched therapy.
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  • 文章类型: Journal Article
    Breast cancer is the most common female malignancy in Taiwan, while conventional clinical and pathological factors fail to provide full explanation for prognostic heterogeneity. The aim of the study was to evaluate the feasibility of targeted sequencing combined with concurrent genes signature to identify somatic mutations with clinical significance. The extended concurrent genes signature was based on the coherent patterns between genomic and transcriptional alterations. Targeted sequencing of 61 Taiwanese breast cancers revealed 1036 variants, including 76 pathogenic and 545 likely pathogenic variants based on the ACMG classification. The most frequently mutated genes were NOTCH, BRCA1, AR, ERBB2, FANCA, ATM, and BRCA2 and the most common pathogenic deletions were FGFR1, ATM, and WT1, while BRCA1 (rs1799965), FGFR2 (missense), and BRCA1 (rs1799949) were recurrent pathogenic SNPs. In addition, 38 breast cancers were predicted into 12 high-risk and 26 low-risk cases based on the extended concurrent genes signature, while the pathogenic PIK3CA variant (rs121913279) was significantly mutated between groups. Two deleterious SH3GLB2 mutations were further revealed by multivariate Cox\'s regression (hazard ratios: 29.4 and 16.1). In addition, we identified several significantly mutated or pathogenic variants associated with differentially expressed signature genes. The feasibility of targeted sequencing in combination with concurrent genes risk stratification was ascertained. Future study to validate clinical applicability and evaluate potential actionability for Taiwanese breast cancers should be initiated.
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