Zymography

Zymography
  • 文章类型: Journal Article
    从农业废物流中回收磷(P)对于减少剩余磷的负面环境影响和地质磷资源的不可持续开采至关重要。污水污泥(SS)是重要的P源;然而,SS在农业中的处理和应用有几个问题。因此,后处理如将SS热解成生物炭(BC)可以解决这些问题中的一些。在这里,我们阐明了土壤中的SS斑块如何与小麦的活根相互作用,并与BC对应物相比影响重要的与P相关的根际过程。小麦植物生长在有沙壤土的根茎中,和1cmØ具有SS或BC的斑块放置在种子下方10cm处。包括阴性对照(CK)。平面光电极pH传感器用于可视化40天植物生长过程中的时空pH变化,薄膜中的扩散梯度(DGT)被应用于不稳定P,酶谱用于可视化酸(ACP)和碱性(ALP)磷酸酶活性的空间分布。此外,有效磷的散装土壤测量,pH值,并进行了ACP活动。最后,细菌P循环基因的相对丰度(phoD,phoX,phnK)在斑块区域根际中测定。仅在SS斑块区域观察到不稳定P,SS进一步触发了根系增殖,并增加了ACP和ALP与根系相互作用的活性。相比之下,BC似乎是惰性的,对根系生长没有明显影响,甚至降低了斑块区域的ACP和ALP活性。此外,与CK相比,BC根际中phoD和phnK基因的相对丰度较低。因此,需要优化BC特性以提高SS作为P肥料的BC的短期效率。
    Recycling of phosphorus (P) from waste streams in agriculture is essential to reduce the negative environmental effects of surplus P and the unsustainable mining of geological P resources. Sewage sludge (SS) is an important P source; however, several issues are associated with the handling and application of SS in agriculture. Thus, post-treatments such as pyrolysis of SS into biochar (BC) could address some of these issues. Here we elucidate how patches of SS in soil interact with the living roots of wheat and affect important P-related rhizosphere processes compared to their BC counterparts. Wheat plants were grown in rhizoboxes with sandy loam soil, and 1 cm Ø patches with either SS or BC placed 10 cm below the seed. A negative control (CK) was included. Planar optode pH sensors were used to visualize spatiotemporal pH changes during 40 days of plant growth, diffusive gradients in thin films (DGT) were applied to map labile P, and zymography was used to visualize the spatial distribution of acid (ACP) and alkaline (ALP) phosphatase activity. In addition, bulk soil measurements of available P, pH, and ACP activity were conducted. Finally, the relative abundance of bacterial P-cycling genes (phoD, phoX, phnK) was determined in the patch area rhizosphere. Labile P was only observed in the area of the SS patches, and SS further triggered root proliferation and increased the activity of ACP and ALP in interaction with the roots. In contrast, BC seemed to be inert, had no visible effect on root growth, and even reduced ACP and ALP activity in the patch area. Furthermore, there was a lower relative abundance of phoD and phnK genes in the BC rhizosphere compared to the CK. Hence, optimization of BC properties is needed to increase the short-term efficiency of BC from SS as a P fertilizer.
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  • 文章类型: Journal Article
    本研究的目的是评估槲皮素对牙本质侵蚀和磨损的原位/体内作用。
    将人牙本质块(2×2×2mm)嵌入并分配给6组:75μg/mL,150μg/mL和300μg/mL槲皮素(Q75,Q150,Q300);120μg/mL氯己定(CHX,阳性对照);和去离子水和乙醇(阴性对照)。用相应的溶液处理样品2分钟,然后如下进行原位/体内侵蚀/研磨挑战7天:每天4次体内侵蚀,然后在每天的第一次和最后一次侵蚀挑战后进行体内牙刷磨损。牙本质损失通过轮廓术评估。另一个牙本质样本用于通过跟踪其特征拉曼峰的空间分布来评估槲皮素进入牙本质的穿透深度。此外,使用牙本质块(7×1.7×0.7mm)通过原位酶谱检测槲皮素对牙本质衍生的基质金属蛋白酶(MMP)抑制的影响,并计算抑制百分比(%)。此外,潜在的胶原交联相互作用与槲皮素通过拉曼光谱检测,交联度是用九三酮测定法测定的。通过极限微拉伸强度测试(μUTS),使用完全脱矿质的牙本质束(0.5×0.5×10mm)来评估槲皮素对牙本质胶原纤维机械性能的影响。数据采用单因素方差分析和Tukey检验(α=0.05)。
    与阴性对照相比,所有治疗方案均显著减少牙本质损失.Q150和Q300的牙本质损失明显少于CHX(均P<0.05)。槲皮素的量随着牙本质深度的增加而减少,最大穿透深度约为25-30µm。原位酶谱显示槲皮素显著抑制牙本质来源的MMPs的活性。Q75和Q150的抑制率明显低于CHX(均P<0.05),但Q300和CHX之间没有发现显着差异(P=0.58)。胶原蛋白与槲皮素的交联相互作用主要涉及氢键,交联度以浓度依赖性方式增加。与对照处理相比,槲皮素处理后的脱矿质牙本质束的μUTS值在统计学上显著增加(所有P<0.05)。
    这项研究提供了第一个直接证据,表明槲皮素可以渗透约25-30μm进入牙本质,并通过抑制牙本质衍生的MMP活性以及去矿质有机基质的交联胶原蛋白来进一步防止牙本质侵蚀和磨损。
    The aim of the present study was to evaluate the in situ/in vivo effect of quercetin on dentin erosion and abrasion.
    Human dentin blocks (2 × 2 × 2 mm) were embedded and assigned to 6 groups: 75 μg/mL, 150 μg/mL and 300 μg/mL quercetin (Q75, Q150, Q300); 120 μg/mL chlorhexidine (CHX, positive control); and deionized water and ethanol (the negative controls). The specimens were treated with the respective solutions for 2 min and then subjected to in situ/in vivo erosive/abrasive challenge for 7 d as follows: in vivo erosion 4 times a day and then in vivo toothbrush abrasion after the first and last erosive challenges of each day. Dentin loss was assessed by profilometry. An additional dentin specimen was used to evaluate the penetration depth of quercetin into dentin by tracking the spatial distribution of its characteristic Raman peak. Moreover, dentin blocks (7 × 1.7 × 0.7 mm) were used to detect the impact of quercetin on dentin-derived matrix metalloproteinase (MMP) inhibition by in situ zymography, and the inhibition percentage (%) was calculated. Additionally, the potential collagen crosslinking interactions with quercetin were detected by Raman spectroscopy, and the crosslinking degree was determined with a ninhydrin assay. Fully demineralized dentin beams (0.5 × 0.5 × 10 mm) were used to evaluate the impact of quercetin on the mechanical properties of dentin collagen fibre by the ultimate micro-tensile strength test (μUTS). The data were analysed by one-way analysis of variance and Tukey\'s test (α = 0.05).
    Compared to the negative controls, all treatment solutions significantly reduced dentin loss. The dentin loss of Q150 and Q300 was significantly less than that of CHX (all P < 0.05). The amount of quercetin decreased with increasing dentin depth, and the maximum penetration depth was approximately 25-30 µm. In situ zymography showed that quercetin significantly inhibited the activities of dentin-derived MMPs. The inhibitory percentages of Q75 and Q150 were significantly lower than that of CHX (all P < 0.05), but no significant difference was found between Q300 and CHX (P = 0.58). The collagen crosslinking interactions with quercetin primarily involved hydrogen bonding and the degree of crosslinking increased in a concentration-dependent manner. Statistically significant increases in μUTS values were observed for demineralized dentin beams after quercetin treatment compared with those of the control treatments (all P < 0.05).
    This study provides the first direct evidence that quercetin could penetrate approximately 25-30 µm into dentin and further prevent dentin erosion and abrasion by inhibiting dentin-derived MMP activity as well as crosslinking collagen of the demineralized organic matrix.
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  • 文章类型: Journal Article
    这项研究旨在研究基质金属蛋白酶(MMP)活性在人牙本质使用原位和明胶酶谱,在家里和办公室漂白之后,与他们的临床暴露时间有关。牙本质标本(n=5)用35%过氧化氢处理(每次50分钟/4次),10%过氧化脲(180分钟/21次),或者没有治疗。全部进行原位酶谱。牙本质切片是,随后,获得,用荧光素结合的明胶覆盖,并用共聚焦激光扫描显微镜检查。使用单向ANOVA和Bonferroni检验(α=0.05)对荧光强度进行定量和统计分析。此外,对从牙本质粉(N=8颗牙齿)获得的蛋白质提取物进行明胶酶谱,用过氧化氢或过氧化脲处理,不同的暴露时间(10/50分钟的过氧化氢;252/1260分钟的过氧化脲)。原位酶谱结果显示漂白标本与对照组无统计学差异,在牙本质小管中表达中等水平的明胶分解活性。明胶酶谱结果显示pro-MMP-9在过氧化脲组中的表达增加。各实验组pro-MMP-2的表达均下降。对健康牙齿的釉质进行的漂白处理不会影响牙本质酶活性。然而,当无保护的牙本质组织被漂白时,基质金属蛋白酶表达更多,特别是当使用过氧化脲时,与曝光时间成正比。
    This study aimed to investigate matrix metalloproteinase (MMP) activity in human dentin using in-situ and gelatin zymography, after at-home and in-office bleaching, related to their clinical exposure times. Dentin specimens (n = 5) were treated with 35% hydrogen peroxide (50 min per session/4 sessions), 10% carbamide peroxide (180 min/21 sessions), or no treatment. All were subjected to in-situ zymography. Dentin slices were, subsequently, obtained, covered with fluorescein-conjugated gelatin, and examined with confocal laser-scanning microscopy. The fluorescence intensity was quantified and statistically analyzed using one-way ANOVA and Bonferroni tests (α = 0.05). Furthermore, gelatin zymography was performed on protein extracts obtained from dentin powder (N = 8 teeth), treated with hydrogen peroxide or carbamide peroxide, with different exposure times (10/50 min for hydrogen peroxide; 252/1260 min for carbamide peroxide). The results of the in-situ zymography showed no statistical differences between the bleached specimens and the control group, with a medium level of gelatinolytic activity expressed in the dentin tubules. The results of gelatin zymography showed an increased expression of pro-MMP-9 in carbamide peroxide groups. The expression of pro-MMP-2 decreased in all the experimental groups. The bleaching treatments performed on the enamel of sound teeth do not influence dentinal enzymatic activity. However, when unprotected dentin tissue is bleached, matrix metalloproteinases are more expressed, particularly when carbamide peroxide is used, proportional to the exposure time.
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  • 文章类型: Journal Article
    OBJECTIVE: The aim of the study was to analyze bone matrix (BMX) organization after bone grafting and repair using a new bioactive glass-ceramic (Biosilicate®) associated or not with particulate autogenous bone graft.
    METHODS: Thirty rabbits underwent surgical bilateral parietal defects and divided into groups according to the materials used: (C) control-blood clot, (BG) particulate autogenous bone, (BS) bioactive glass-ceramic, and BG + BS. After 7, 14, and 30 days post-surgery, a fragment of each specimen was fixed in - 80 °C liquid nitrogen for zymographic evaluation, while the remaining was fixed in 10% formalin for histological birefringence analysis.
    RESULTS: The results of this study demonstrated that matrix organization in experimental groups was significantly improved compared to C considering collagenous organization. Zymographic analysis revealed pro-MMP-2, pro-MMP-9, and active (a)-MMP-2 in all groups, showing gradual decrease of total gelatinolytic activity during the periods. At day 7, BG presented more prominent gelatinolytic activity for pro-MMP-2 and 9 and a-MMP-2, when compared to the other groups. In addition, at day 7, a 53% activation ratio (active form/[active form + latent form]) was evident in C group, 33% in BS group, and 31% in BG group.
    CONCLUSIONS: In general, BS allowed the production of a BMX similar to BG, with organized collagen deposition and MMP-2 and MMP-9 disponibility, permitting satisfactory bone remodeling at the late period.
    CONCLUSIONS: The evaluation of new bone substitute, with favorable biological properties, opens the possibility for its use as a viable and efficient alternative to autologous bone graft.
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  • 文章类型: Journal Article
    Peptidase therapy is suggested to be effective to minimize gliadin toxicity in celiac disease (CD). Hence, present study deals with gliadin-hydrolysing peptidases. The efficient peptidase from the Bacillus tequilensis was purified using ammonium sulfate fractionation and preparative electrophoresis. Analysis of in-solution and in-gel hydrolysis of gliadin using one and two-dimensional SDS-PAGE revealed nearly complete hydrolysis of gliadin peptides after 180 min of incubation with B. tequilensis protease. Purified peptidase was found to be stable at acidic (pH 3.5) to neutral (pH 7.2) pH range. The molecular mass and isoelectric point of the peptidase were observed around 29 kDa and 5.2, respectively. The internal protein sequence obtained through mass spectrometric analysis suggested that peptidase might belong to peptidase S9 family known for prolyl-specific peptidases. This study recommends the possible applicability of this peptidase for elimination of immunotoxic gliadin peptides and may prove useful in CD treatment.
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  • 文章类型: Journal Article
    鞘氨醇-1-磷酸(S1P)是一种生物活性脂质,可调节胚胎发育过程中细胞的迁移行为。此外,S1P可能通过增强肿瘤细胞的迁移能力和侵袭力促进肿瘤进展。迁移是一个复杂的过程,意味着细胞骨架的重组和结构的形成,使细胞运动。除了具有与迁移类似的要求外,侵袭还涉及细胞外基质(ECM)的蛋白水解降解。基质金属蛋白酶(MMPs)已被鉴定为分解ECM的成分,允许癌细胞扩散出原发肿瘤.在这一章中,我们将描述不同的技术来研究S1P诱导的迁移和入侵。为此,我们包括详细的终点分析方案,以研究迁移/入侵,和酶谱测定分析MMP-2和MMP-9活性,这些活性在我们的实验室中在人黑色素瘤细胞系中标准化。
    Sphingosine-1-phosphate (S1P) is a bioactive lipid that modulates migratory behavior of cells during embryonic development. In addition, S1P might promote tumor progression by enhancing migratory ability and invasiveness of tumor cells. Migration is a complex process that implies cytoskeletal reorganization and formation of structures that enable cell movement. Besides having similar requirements than migration, invasion also involves proteolytic degradation of extracellular matrix (ECM). Matrix metalloproteases (MMPs) have been identified to break down components of the ECM, allowing cancer cells to spread out of the primary tumor. In this chapter, we will describe different techniques to study migration and invasion induced by S1P. To this end, we include detailed protocols of end-point assays to study migration/invasion, and zymography assay to analyze MMP-2 and MMP-9 activity that were standardized in our laboratory in human melanoma cell lines.
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  • 文章类型: Comparative Study
    Submerged fermentation (SmF) and solid-state fermentation (SSF) of Aspergillus japonicus PJ01 for multi-enzyme complexes (MEC) production were comparatively studied. The results showed that orange peel and wheat bran were the best substrates for MEC production in SmF and SSF, respectively. After 72 h of cultivation under SmF, the maximal pectinase, CMCase, and xylanase activities reached 2610, 85, and 335 U/gds (units/gram dry substrate), respectively; while after 72 h of cultivation under SSF, these three enzymes\' activities reached 966, 58, and 1004 U/gds, respectively. Effects of ultrasound on extraction of crude enzymes from SSF medium were determined, the maximal activities of pectinase, CMCase, and xylanase increased to 1.20, 1.48, and 1.30-fold, respectively. Apparent different mycelia growths of SSF and SmF were observed by scanning electron microscopy; and different isoforms of the crude enzyme extracts from SSF and SmF were presented by zymogram analysis.
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    文章类型: Journal Article
    目的:目前研究的目的是比较几种用于治疗炎症的药物的治疗指标,这些药物包括:维生素E,甘草的水醇提取物,澳大利亚Matricaria,地塞米松,吡罗昔康和双氯芬酸使用Wehi-164纤维肉瘤细胞。
    方法:细胞毒性评价是基于活体染料排除试验。基质金属蛋白酶抑制(MMPI)通过明胶酶酶谱方法评估。收集的数据用于估计IC50(50%MMPI浓度),LC50(50%细胞毒性浓度)和治疗指数(LC50/IC50)。
    结果:在使用的天然抗炎药中,金黄色葡萄球菌是MMP的毒性最小和最有效的抑制剂。维生素E不仅增加了MMP的活性,但也是所有测试药物中毒性最大的。就对维生素E的毒性而言,其次是G.glabra。双氯芬酸的毒性高于吡罗昔康和地塞米松。
    结论:这项研究的结果表明,被认为具有抗炎特性的药用植物并不同样有效和安全。为了评估这些发现的含义,需要进一步的体外和体内研究。
    OBJECTIVE: THE AIM OF THE PRESENT STUDY WAS TO COMPARE THE THERAPEUTIC INDICES OF SEVERAL AGENTS USED IN TREATMENT OF INFLAMMATORY CONDITIONS WHICH INCLUDED: Vitamin E, hydro-alcoholic extracts of Glycyrrhiza glabra, Matricaria aurea, dexamethasone, piroxicam and diclofenac using Wehi-164 fibrosarcoma cells.
    METHODS: Cytotoxicity evaluation was based on vital dye exclusion assay. Matrix-metalloproteinases inhibition (MMPI) was assessed by gelatinase zymography method. The collected data were used to estimate the IC50 (50% MMPI concentration), LC50 (50% cytotoxicity concentration) and the therapeutic index (LC50/IC50).
    RESULTS: Among the natural anti-inflammatory agents used, M. aurea was the least toxic and the most effective inhibitor of MMP. Vitamin E not only increased MMP activity, but also was the most toxic of all the agents tested. Next in terms of toxicity to vitamin E was G. glabra. Diclofenac was more toxic than both piroxicam and dexamethasone.
    CONCLUSIONS: Findings from this study suggest that medicinal plants reputed to have anti-inflammatory properties are not equally effective and safe. In order to assess the implications of these findings, further in vitro and in vivo studies are needed.
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