Salmonella enterica

肠沙门氏菌
  • 文章类型: Journal Article
    背景:沙门氏菌,一种重要的食源性病原体,据估计,全球有9510万例病例和50,771例死亡。在中国,约有80%的人感染沙门氏菌,近年来报道了一些不常见的血清型引起的感染,虽然不是S.Welikade.本研究报告了中国首例由S.Welikade引起的临床病例,并通过基因组分析将中国S.Welikade分离株置于全球分离株的背景下。为了比较,还在中国沙门氏菌本地监测系统(CLSSS)中筛选了S.Welikade分离株。使用肉汤微量稀释法确定28种抗菌剂的最小抑制浓度(MIC)。在Illumina平台上对分离株进行测序,以鉴定抗微生物药物抗性基因,毒力基因,和系统发育关系。
    结果:S.Welikade分离株(Sal097)于2021年从一名患有急性胃肠炎的2岁男孩中分离出来。连同在CLSSS中发现的另外两个分离株,这三个中国分离株对所有被检查的抗菌药物都敏感,其序列类型为ST5123(n=2)和ST3774(n=1)。基于单核苷酸多态性(SNP)的系统发育分析表明,全球S.Welikade菌株可分为四组,将这三个中国分离株分为B(n=2;Sal097和XXB1016)和C(n=1;XXB700)。B组,两个中国ST5123分离株与三个英国ST5123分离株紧密聚集。C组,中国分离株与其他12个ST3774分离株密切相关。S.Welikade分离株中的毒力基因的数量范围为59至152。galF基因只存在于A组中,pipB2基因仅在A组中缺失,avrA基因只在B组中缺失,和所有的B,sseK1,sspH2,STM0287和tlde1仅在C和D组分离株中发现。Sal097分离株有15个独特的基因座。
    结论:本研究首次对中国的临床S.Welikade分离株进行表征和调查。该临床分离株负责2021年的小儿胃肠炎病例,不具有抗菌素耐药性,属于全球S.Welikade基因组的系统发育组B。
    BACKGROUND: Salmonella, an important foodborne pathogen, was estimated to be responsible for 95.1 million cases and 50,771 deaths worldwide. Sixteen serovars were responsible for approximately 80% of Salmonella infections in humans in China, and infections caused by a few uncommon serovars have been reported in recent years, though not with S. Welikade. This study reports the first clinical case caused by S. Welikade in China and places Chinese S. Welikade isolates in the context of global isolates via genomic analysis. For comparison, S. Welikade isolates were also screened in the Chinese Local Surveillance System for Salmonella (CLSSS). The minimum inhibitory concentrations (MICs) of 28 antimicrobial agents were determined using the broth microdilution method. The isolates were sequenced on an Illumina platform to identify antimicrobial resistance genes, virulence genes, and phylogenetic relationships.
    RESULTS: The S. Welikade isolate (Sal097) was isolated from a two-year-old boy with acute gastroenteritis in 2021. Along with the other two isolates found in CLSSS, the three Chinese isolates were susceptible to all the examined antimicrobial agents, and their sequence types (STs) were ST5123 (n = 2) and ST3774 (n = 1). Single nucleotide polymorphism (SNP)-based phylogenetic analysis revealed that global S. Welikade strains can be divided into four groups, and these three Chinese isolates were assigned to B (n = 2; Sal097 and XXB1016) and C (n = 1; XXB700). In Group B, the two Chinese ST5123 isolates were closely clustered with three UK ST5123 isolates. In Group C, the Chinese isolate was closely related to the other 12 ST3774 isolates. The number of virulence genes in the S. Welikade isolates ranged from 59 to 152. The galF gene was only present in Group A, the pipB2 gene was only absent from Group A, the avrA gene was only absent from Group B, and the allB, sseK1, sspH2, STM0287, and tlde1 were found only within Group C and D isolates. There were 15 loci unique to the Sal097 isolate.
    CONCLUSIONS: This study is the first to characterize and investigate clinical S. Welikade isolates in China. Responsible for a pediatric case of gastroenteritis in 2021, the clinical isolate harbored no antimicrobial resistance and belonged to phylogenetic Group B of global S. Welikade genomes.
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  • 文章类型: Journal Article
    最低抑制浓度(MIC)测定经常因其代表性而受到质疑。特别是当食源性病原体被检测时,重要的是还要考虑人体消化系统的参数。因此,本研究旨在评估两种抗生素的抑制能力,环丙沙星和四环素,对抗肠道沙门氏菌和单核细胞增生李斯特菌,在具有代表性的环境条件下。更具体地说,从简单的有氧实验室条件开始,逐渐将人类胃肠道(GIT)恶劣环境的各个方面添加到GIT的体外模拟中。这样,包括缺氧环境在内的参数的影响,GIT的物理化学条件(低胃液pH,消化酶,胆汁酸)和肠道微生物群进行了评估。通过包括选定的肠道细菌物种的代表性财团来模拟后者。在这项研究中,建立了两种抗生素对相关食源性病原体的MIC,在前面提到的环境条件下。肠球菌的结果强调了进行此类研究时厌氧环境的重要性,因为病原体在这样的条件下生长。包含物理化学屏障导致肠球菌和单核细胞增生李斯特菌的结果完全相反,因为前者对环丙沙星更敏感,而后者对四环素的敏感性较低。最后,即使在没有抗生素的情况下,肠道细菌也对单核细胞增生李斯特菌具有杀菌作用,而肠道细菌保护肠球菌免受环丙沙星的影响。
    Minimum inhibitory concentrations (MIC) assays are often questioned for their representativeness. Especially when foodborne pathogens are tested, it is of crucial importance to also consider parameters of the human digestive system. Hence, the current study aimed to assess the inhibitory capacity of two antibiotics, ciprofloxacin and tetracycline, against Salmonella enterica and Listeria monocytogenes, under representative environmental conditions. More specifically, aspects of the harsh environment of the human gastrointestinal tract (GIT) were gradually added to the experimental conditions starting from simple aerobic lab conditions into an in vitro simulation of the GIT. In this way, the effects of parameters including the anoxic environment, physicochemical conditions of the GIT (low gastric pH, digestive enzymes, bile acids) and the gut microbiota were evaluated. The latter was simulated by including a representative consortium of selected gut bacteria species. In this study, the MIC of the two antibiotics against the relevant foodborne pathogens were established, under the previously mentioned environmental conditions. The results of S. enterica highlighted the importance of the anaerobic environment when conducting such studies, since the pathogen thrived under such conditions. Inclusion of physicochemical barriers led to exactly opposite results for S. enterica and L. monocytogenes since the former became more susceptible to ciprofloxacin while the latter showed lower susceptibility towards tetracycline. Finally, the inclusion of gut bacteria had a bactericidal effect against L. monocytogenes even in the absence of antibiotics, while gut bacteria protected S. enterica from the effect of ciprofloxacin.
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  • 文章类型: Case Reports
    背景:沙门氏菌为革兰氏阴性,兼性厌氧肠杆菌科细菌由两个物种组成,肠沙门氏菌和邦戈里沙门氏菌。侵袭性疾病,比如脑膜炎,导致住院,短期和长期并发症,和高死亡率。
    方法:一名4个月大的女婴因腹泻和发热入院。白细胞计数,尿液分析,尿液培养物,粪便培养正常。她用头孢呋辛静脉注射治疗5天。她口服头孢丙齐出院5天。治疗结束后,她因发烧再次住进了同一家医院,腹泻,呕吐物,和怪癖。脑脊液检查显示细胞增多,而S.enterica被隔离。头孢曲松治疗,阿米卡星,和地塞米松开始。因为颅内高压的迹象,她被转移到我们三级医院的儿科重症监护室。继续静脉注射头孢曲松治疗。脑MRI显示蛛网膜下腔扩张。头围的增加和脉冲状的fontanel导致了新的脑MRI,其中注意到心室扩张和实质外硬膜下收集。将头孢曲松改为头孢噻肟,并加入环丙沙星。她的临床状况很好;她的脑部MRI,一周后,显着改善,并完成了为期5周的静脉抗生素疗程。她的基线免疫缺陷筛查测试正常,停止治疗后两个月重复MRI未发现先前的异常。
    结论:侵袭性沙门氏菌病,比如脑膜炎,在当今的工业国家中很少见,优化管理尚未建立。沙门氏菌脑膜炎的晚期并发症需要更彻底的神经发育随访。
    BACKGROUND: Salmonellae are gram-negative, facultatively anaerobic Enterobacteri-aceae consisting of two species, Salmonella enterica and Salmonella bongori. Invasive diseases, such as meningitis, result in hospitalization, short and long-term complications, and high mortality rates.
    METHODS: A 4-month-old baby girl was admitted to a district hospital because of diarrhea and fever. WBC count, urinalysis, urine cultures, and stool cultures were normal. She was treated with intravenous cefuroxime for 5 days. She was discharged on oral cefprozil for 5 days. After the end of therapy, she was admitted again to the same hospital with fever, diarrhea, vomits, and irri-tability. Cerebrospinal fluid examination revealed pleocytosis, while S. enterica was isolated. Em-pirical therapy with ceftriaxone, amikacin, and dexamethasone was started. Because of intracranial hypertension signs, she was transferred to the pediatric intensive care unit of our tertiary hospital. Therapy continued with intravenous ceftriaxone. Brain MRI revealed subarachnoid space dilata-tion. Increased head circumference and pulsating bregmatic fontanel led to a new cerebral MRI, in which ventricular dilatation and extraparenchymal subdural collection were noted. Ceftriaxone was changed to cefotaxime and ciprofloxacin was added. She remained clinically well; her brain MRI, a week later, showed marked improvement, and the course of intravenous antibiotics for 5 weeks was completed. Her baseline immunodeficiency screening tests were normal and repeat MRI two months post-treatment cessation did not reveal the previous abnormalities.
    CONCLUSIONS: Invasive Salmonella diseases, such as meningitis, are very uncommon in industrial countries nowadays, and the optimal management is yet not well established. Late onset of com-plications from Salmonella meningitis warrants more thorough neurodevelopmental follow-ups.
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  • 文章类型: Case Reports
    霉菌性(感染)主动脉瘤是一种严重的临床疾病,发病率和死亡率都很高。沙门氏菌属。是革兰氏阴性,杆状细菌,通常局限于胃肠道,自发消退,但可以发展为侵入性感染,如菌血症。可能会出现严重的并发症,特别是在虚弱的时候,老年人,和新生儿患者。我们描述了一个74岁的女性,有糖尿病和高血压病史,伴有呼吸急促,发烧,发冷,腹痛,呕吐,和腹泻。病人的血培养检测为肠沙门氏菌阳性,根据结果给她服用头孢曲松,但他仍有症状.胸部对比计算机断层扫描显示胸主动脉瘤。该患者被紧急转移到更高水平的护理,并接受了紧急的胸主动脉腔内修复术,包括支架置入和静脉抗生素。在这种高风险患者中,感染的动脉瘤和相关的脓肿形成的存在使血管内途径比其他选择(如开放手术)更合适。动脉瘤切除和结扎而不进行动脉重建,切除并立即重建,和间隔重建切除。
    Mycotic (infected) aortic aneurysm is a severe clinical condition with high morbidity and mortality. Salmonella spp. is a Gram-negative, rod-shaped bacteria that is typically limited to the gastrointestinal tract and resolves spontaneously but can progress to invasive infections such as bacteremia. Serious complications may arise, particularly in debilitated, elderly, and neonatal patients. We describe the case of a 74-year-old female with a history of diabetes and hypertension who presented with shortness of breath, fever, chills, abdominal pain, vomiting, and diarrhea. The patient\'s blood culture tested positive for Salmonella enterica, and she was given ceftriaxone based on the results, but he remained symptomatic. A computed tomography scan of the chest with contrast revealed a mycotic aneurysm of the thoracic aorta. The patient was urgently transferred to a higher level of care and underwent emergency thoracic endovascular aortic repair with stenting and intravenous antibiotics. The presence of an infected aneurysm and associated abscess formation in such high-risk patients makes the endovascular approach more suitable than other options such as open surgery, aneurysmal excision and ligation without arterial reconstruction, excision with immediate reconstruction, and excision with interval reconstruction.
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  • 文章类型: Case Reports
    非伤寒沙门氏菌通常表现为胃肠炎。然而,侵袭性沙门氏菌感染,这通常可以在免疫受损的患者中看到,有主动脉受累的倾向,尤其是有动脉粥样硬化危险因素的患者。在这里,我们介绍了一名60岁的女性,患有多种合并症,目前正在使用类风湿关节炎的免疫抑制剂,出现恶心的人,呕吐,和发烧三周,被发现有沙门氏菌菌血症。肠道沙门氏菌血培养呈阳性。腹部增强计算机断层扫描(CT)考虑真菌性主动脉炎。该患者接受了主动脉溃疡的腔内修复术,并接受了为期六周的头孢曲松治疗。霉菌性动脉瘤是侵袭性沙门氏菌感染的罕见但潜在致命的并发症。它通常发生在具有动脉粥样硬化危险因素的老年男性中。它主要表现为发烧,背痛,和/或腹痛。我们的患者是一名中年女性,表现出非特异性症状。CT血管造影是选择的诊断方式,治疗可能需要外科血管修复和长期抗生素。诊断沙门氏菌相关性真菌性动脉瘤/主动脉炎需要高度怀疑。早期诊断和治疗可以提高死亡率。
    Non-typhoidal Salmonella typically presents with gastroenteritis. However, an invasive Salmonella infection, which may be typically seen in immunocompromised patients, has a propensity for aortic involvement, especially in patients with risk factors for atherosclerosis. Here we present a 60-year-old female with multiple comorbid conditions and currently on immunosuppressants for rheumatoid arthritis, who presented with nausea, vomiting, and fever of three weeks duration and was found to have Salmonella bacteremia. Blood cultures were positive for Salmonella enterica. Computed tomography (CT) abdomen with contrast was concerning for mycotic aortitis. The patient underwent endovascular repair of an aortic ulcer and was treated with a six-week course of ceftriaxone. Mycotic aneurysm is a rare but potentially fatal complication of invasive Salmonella infection. It occurs typically in older men with atherosclerotic risk factors. It mostly presents as fever, back pain, and/or abdominal pain. Our patient was a middle-aged female who presented with non-specific symptoms. CT angiogram is the diagnostic modality of choice and treatment may require surgical vascular repair and long-term antibiotics. A high level of suspicion is needed to diagnose Salmonella-related mycotic aneurysm/aortitis. Early diagnosis and treatment may improve the mortality.
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  • 文章类型: Case Reports
    非伤寒沙门氏菌病是发展中国家肠胃炎和侵袭性疾病的重要病因,儿科年龄组的耐药性和死亡率增加。我们在这里报道,一个罕见的菌血症和脑脓肿的3岁女性儿童与肠道沙门氏菌血清给作为病原体。
    Non-typhoidal Salmonellosis are an important cause of gastroenteritis and invasive disease in developing countries, with increase resistance and mortality in paediatric age group. We report here, a rare case of bacteremia and brain abscess in a 3year old female child with Salmonella enterica serovar Give as a causative organism.
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  • 文章类型: Case Reports
    爬行动物,包括蛇,可以被多种病原体微生物无症状感染,包括沙门氏菌.,这被认为是公众和动物健康的重要问题。小而无人居住的小岛在生态上与大陆截然不同,代表着有趣的研究领域,发现野生居民意想不到的生物学和微生物学方面。这项工作报告了非常罕见的肠道沙门氏菌的存在,隔离在来自地中海的一个意大利无人居住的岛屿的本地野生蛇(Hierophisviridiflavus)的尸体中,蒙特克里斯托.据我们所知,美国肠杆菌血清型Yopougon以前只在34年前在象牙海岸被隔离过一次,来自人类粪便样本。在本研究中,我们介绍了新分离株的基因组特征,与先前分离的人类来源的肠球菌血清变型Yopougon菌株以及公共数据库中可用的其他序列的系统发育比较。此外,提供了对文献和我们病例史的现有数据的广泛回顾.我们的发现代表了一些病原体在其宿主内传播很长一段距离然后感染其他病原体的能力的一个例子,甚至来自不同的分类单元。
    Reptiles, including snakes, can be asymptomatically infected with multiple pathogen microorganisms, including Salmonella spp., which is considered an important concern for public and animal health. Small and uninhabited isles are quite ecologically different from mainland and represent interesting fields of study, to discover unexpected biological and microbiological aspects of their wild inhabitants. This work reports the presence of the very rare Salmonella enterica serovar Yopougon, isolated in a carcass of a native wild snake (Hierophis viridiflavus) from an Italian uninhabited island of Mediterranean Sea, Montecristo. To our knowledge, S. enterica serovar Yopougon was previously isolated only once 34 years earlier in Ivory Coast, from a human fecal sample. In the present study, we present the genomic characterization of the new isolate, the phylogenetic comparison with the previously isolated S. enterica serovar Yopougon strain of human origin and with other sequences available in public databases. In addition, an extensive review of available data in the literature and from our case history is provided. Our finding represents an example of the ability of some pathogens to travel for very long distances within their hosts and then to infect others, even from different taxa.
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  • 文章类型: Case Reports
    Non-typhoidal Salmonella infections (NTSI) can cause bacterial diarrhea, mostly leading to self-limiting gastroenteritis. However, in at-risk populations, NTSI can have severe complications. As transmission is most commonly foodborne, infection is rare in the breast- or bottle-fed very young. Another route is increasingly implicated, however, in newborns and infants especially: Contact with reptiles and amphibians. We describe infection with Salmonella enterica subsp. enterica ser. Monschaui (S. Monschaui), transmitted from bearded dragons, in a three-week-old boy. The boy initially appeared well, on the next morning deterioration was dramatic, with tachypnea, tachycardia, and mottled skin. Gram-negative sepsis was documented on day 2. His case prompted a review of published instances of reptile- and amphibian-associated salmonellosis (RAAS), summarized here. Association of S. Monschaui infection with exposure to reptiles and amphibians prompted inquiry into household pets. The parents had kept bearded dragons (Pogona sp.), the last of which died two weeks before the patient was born; confirmation of colonization with S. Monschaui was thus precluded. Among 63 reports (-5,000 cases) of RAAS or S. Monschaui, 62 appeared between 1995 and 2022, 10 were single case reports, and 53 were original articles with -5,000 cases; vectors included turtles, frogs, lizards, and snakes. RAAS is not a new phenomenon, but its incidence recently has risen due to the increased popularity of reptiles and amphibians as non-traditional pets. These animals can carry Salmonella sp. and transmit it to humans, posing a risk particularly to infants and other vulnerable persons. Risk mitigation requires that those bringing such pets into the home be informed of dangers associated with reptile and amphibian contact; that those selling reptiles and amphibians be mandated to inform customers comprehensively may be in order.
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  • 文章类型: Case Reports
    背景:肠道沙门氏菌血清型Choleraesuis感染通常会引起自限性胃肠道疾病。在免疫功能低下的个体中,腹外感染通常继发于菌血症,在有免疫能力的宿主中相对罕见。
    方法:一名65岁的白人女性最初因胸部伤口愈合不良而就诊于胸外科诊所。她的病情始于机械坠落击中她的胸部,并间隔发展出一个柔软的肿块,后来自发地排出。静脉造影的胸部计算机断层扫描扫描显示异常浸润,少量液体和空气灶与左第七肋软骨前方的小脓肿一致。脓肿的抽吸培养物生长了对氨苄西林和甲氧苄啶/磺胺甲恶唑敏感的肠道链球菌血清型Choleraesuis。患者先前没有胃肠道感染的体征或症状。血培养为阴性。有青霉素过敏的背景,她接受了甲氧苄啶/磺胺甲恶唑治疗,后来由于伤口持续引流而使用头孢曲松。静脉(IV)造影的后续胸部计算机断层扫描扫描显示,以前在计算机断层扫描扫描中看到的持续异常发现,并出现窦道。患者随后接受了手术清创术和左第七软骨软骨部分切除术以及瘘管切除术。她恢复顺利,病情完全解决。
    结论:我们报告了一例罕见的病例,该病例是由于肠道链球菌血清型Choleraesuis引起的胸壁脓肿并伴有肋软骨炎,患者没有免疫缺陷或菌血症史。先前文献中已经报道了由沙门氏菌引起的肠外感染而没有记载的菌血症。受影响地区的局部创伤史可能会导致感染。诊断通常通过受影响区域的临床评估和培养来完成。治疗通常涉及靶向抗生素治疗,但可能需要手术干预以实现源控制和治愈。
    BACKGROUND: Salmonella enterica serotype Choleraesuis infections usually cause self-limited gastrointestinal diseases. Extra-abdominal infections are often secondary to bacteremia in immunocompromised individuals and are relatively rare in immunocompetent hosts.
    METHODS: A 65-year-old Caucasian female initially presented to the thoracic surgery clinic due to a poorly healing wound on her chest. Her condition started after a mechanical fall hitting her chest with interval development of a tender lump that later spontaneously drained. A chest computed tomography scan with intravenous contrast demonstrated an abnormal infiltration with small foci of fluid and air consistent with a small abscess anterior to the left seventh costal cartilage. Aspirate culture of the abscess grew S. enterica serotype Choleraesuis susceptible to ampicillin and trimethoprim/sulfamethoxazole. The patient had no prior history of signs or symptoms of gastrointestinal infection. Blood cultures were negative. With a background of penicillin allergy, she was treated with trimethoprim/sulfamethoxazole, and later with ceftriaxone due to persistent drainage of the wound. Follow-up chest computed tomography scan with intravenous (IV) contrast showed continued abnormal findings previously seen in the computed tomography scan with the appearance of a sinus tract. The patient subsequently underwent surgical debridement and partial resection of the left seventh costochondral cartilage and excision of the fistula. She had an uneventful recovery and complete resolution of her condition.
    CONCLUSIONS: We report a rare case of chest wall abscess with associated costochondritis due to S. enterica serotype Choleraesuis in a patient with no evidence of immunodeficiency nor history of bacteremia. Extraintestinal infections due to Salmonella without documented bacteremia have been previously reported in the literature. History of local trauma to the affected area might contribute to the seeding of infection. Diagnosis is often accomplished by clinical evaluation and culture of the affected area. Treatment often involves targeted antibiotic therapy but may require surgical intervention to achieve source control and cure.
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  • 文章类型: Case Reports
    沙门氏菌雷丁是一种罕见的肠道沙门氏菌血清型,与世界各地的散发病例和罕见暴发有关。本文描述了从印度尼西亚进口到莫斯科的罕见的全身性S.Reading感染病例,俄罗斯。一名三十七岁男子因发烧入院,弱点,从印度尼西亚回来后头痛。在印尼逗留期间,他出现了胃肠道感染的症状,在那里解决了。然而,回到莫斯科后,他的病情因高烧而恶化,他被诊断为由S.Reading引起的全身性沙门氏菌病(血液和粪便培养阳性)。该病例强调了发热患者鉴别诊断的重要性。强调了与前往异国旅行相关的健康风险以及预防措施的重要性。这是东欧第一个出版的S.Reading案例。
    Salmonella Reading is a rare serotype of Salmonella enterica and is associated with sporadic cases and rare outbreaks worldwide. This article describes a rare case of generalized S. Reading infection imported from Indonesia to Moscow, Russia. A 37-year-old man was admitted to the hospital with fever, weakness, and headache after returning from Indonesia. During his stay in Indonesia, he developed symptoms of a gastrointestinal infection, which resolved there. However, upon return to Moscow, his condition worsened due to high fever, and he was diagnosed with a generalized salmonellosis caused by S. Reading (positive blood and stool culture). This case highlights the importance of differential diagnosis in patients with fever. The health risks associated with traveling to exotic countries and the importance of preventive measures are emphasized. This is the first published case of S. Reading in Eastern Europe.
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