Protoporphyrins

原卟啉
  • 文章类型: Journal Article
    光生物调节(PBM)代表了一种用于非侵入性治疗干预的有前途和强大的方法。这一新兴的研究领域由于其在多个学科领域的潜力而获得了相当大的关注,包括医学,神经科学,和运动医学。虽然PBM在许多医学应用中显示出刺激各种细胞过程的能力,治疗参数的微调,如波长,辐照度,治疗持续时间,和照明几何,仍然是一个持续的挑战。此外,需要进一步的研究来揭示具体的作用机制,并为不同的临床应用建立标准化的方案.鉴于线粒体在PBM机制中起关键作用的广泛接受的理解,我们的研究探讨了大量的PBM照明参数,同时评估PBM的影响的基础上的终点反映人心肌细胞(HCM)的线粒体代谢,以其高线粒体密度而闻名。这些终点包括:i)原卟啉IX(PpIX)的内源性产生,ii)罗丹明123(Rhod123)监测的线粒体电位变化,iii)HCM耗氧量的变化,iv)线粒体中Rhod123的荧光寿命,和v)线粒体形态的改变。在评估PBM效应的这些不同方法之间观察到的良好相关性强调了监测内源性PpIX产生提供了对线粒体代谢活性的有趣的间接见解。该结论是重要的,因为许多批准的疗法和癌症检测方法是基于PpIX的使用。最后,这种相关性强烈表明,上述PBM效应具有共同的“基本”机制起源。
    Photobiomodulation (PBM) represents a promising and powerful approach for non-invasive therapeutic interventions. This emerging field of research has gained a considerable attention due to its potential for multiple disciplines, including medicine, neuroscience, and sports medicine. While PBM has shown the ability to stimulate various cellular processes in numerous medical applications, the fine-tuning of treatment parameters, such as wavelength, irradiance, treatment duration, and illumination geometry, remains an ongoing challenge. Furthermore, additional research is necessary to unveil the specific mechanisms of action and establish standardized protocols for diverse clinical applications. Given the widely accepted understanding that mitochondria play a pivotal role in the PBM mechanisms, our study delves into a multitude of PBM illumination parameters while assessing the PBM\'s effects on the basis of endpoints reflecting the mitochondrial metabolism of human cardiac myocytes (HCM), that are known for their high mitochondrial density. These endpoints include: i) the endogenous production of protoporphyrin IX (PpIX), ii) changes in mitochondrial potential monitored by Rhodamine 123 (Rhod 123), iii) changes in the HCM\'s oxygen consumption, iv) the fluorescence lifetime of Rhod 123 in mitochondria, and v) alterations of the mitochondrial morphology. The good correlation observed between these different methods to assess PBM effects underscores that monitoring the endogenous PpIX production offers interesting indirect insights into the mitochondrial metabolic activity. This conclusion is important since many approved therapeutics and cancer detection approaches are based on the use of PpIX. Finally, this correlation strongly suggests that the PBM effects mentioned above have a common \"fundamental\" mechanistic origin.
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  • 文章类型: Journal Article
    单唾液酸神经节苷脂(GM1),一种普遍存在的脂筏成分,和血红素,血红素蛋白如血红蛋白的组成部分,对于调节细胞通讯和氧气运输的大脑神经元和红细胞红细胞的细胞膜至关重要。原卟啉IX(PPIX)及其衍生物血红素,相反,当过量引起血液系统疾病时显示出显著的细胞毒性作用,比如地中海贫血,贫血,疟疾,和神经变性。然而,到目前为止,人们对它们与细胞膜相互作用的深入分子病因知之甚少。在这里,已经研究了在PPIX及其衍生物血红素存在下磷脂和GM1二元混合物的聚合物垫支持的脂质双层(SLB)的结构,以预测模型磷脂膜中的分子相互作用。已采用基于高分辨率同步加速器的X射线散射技术来探索不同成分和浓度的组件的平面外结构。结构变化已与从Langmuir单层等温线获得的平均分子面积的等压变化相结合,以预测添加剂引起的膜冷凝和流化。PPIX诱导的无GM1磷脂SLB流态化,在存在GM1的情况下,结构变化提高了2倍,从而逆转为缩合。在原始SLB中观察到血红素浓度依赖性线性缩合效应。效果明显下降,并且观察到在含有GM1的混合SLB中失去了线性。我们的研究表明,GM1改变了血红素和PPIX与膜的相互作用,这可以用疏水和静电相互作用来解释。我们的研究表明GM1与PPIX和血红素的有利和不利的相互作用,分别,在膜中。在SLB和底层聚合物垫层中观察到的结构变化导致了分子特异性相互作用模型的提出,该模型可以使专门用于药物设计的制药行业受益。我们的研究可能丰富了我们对神经退行性疾病和药物-膜相互作用的基本生物物理理解。
    Monosialoganglioside (GM1), a ubiquitous component of lipid rafts, and hemin, an integral part of heme proteins such as hemoglobin, are essential to the cell membranes of brain neurons and erythrocyte red blood cells for regulating cellular communication and oxygen transport. Protoporphyrin IX (PPIX) and its derivative hemin, on the contrary, show significant cytotoxic effects when in excess causing hematological diseases, such as thalassemia, anemia, malaria, and neurodegeneration. However, the in-depth molecular etiology of their interactions with the cell membrane has so far been poorly understood. Herein, the structure of the polymer cushion-supported lipid bilayer (SLB) of the binary mixture of phospholipid and GM1 in the presence of PPIX and its derivative hemin has been investigated to predict the molecular interactions in model phospholipid membranes. A high-resolution synchrotron-based X-ray scattering technique has been employed to explore the out-of-plane structure of the assembly at different compositions and concentrations. The structural changes have been complemented with the isobaric changes in the mean molecular area obtained from the Langmuir monolayer isotherm to predict the additive-induced membrane condensation and fluidization. PPIX-induced fluidization of phospholipid SLB without GM1 was witnessed, which was reversed to condensation with 2-fold higher structural changes in the presence of GM1. A hemin concentration-dependent linear condensing effect was observed in the pristine SLB. The effect was significantly reduced, and the linearity was observed to be lost in the mixed SLB containing GM1. Our study shows that GM1 alters the interaction of hemin and PPIX with the membrane, which could be explained with the aid of hydrophobic and electrostatic interactions. Our study indicates favorable and unfavorable interactions of GM1 with PPIX and hemin, respectively, in the membrane. The observed structural changes in both SLB and the underlying polymer cushion layer lead to the proposal of a molecule-specific interaction model that can benefit the pharmaceutical industries specialized for drug designing. Our study potentially enriches our fundamental biophysical understanding of neurodegenerative diseases and drug-membrane interactions.
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  • 文章类型: Journal Article
    5-氨基乙酰丙酸(5-ALA)荧光技术现已广泛应用于特定中枢神经系统(CNS)肿瘤的术中可视化。该技术的先前技术实施依赖于专门修改的手术显微镜来可视化肿瘤内荧光原卟啉(PpIX)。虽然这种方法显然允许可靠的术中肿瘤可视化,它需要专门修改的手术显微镜的可用性和他们的使用,即使在情况下,手术神经外科医生会喜欢使用手术放大镜。最近,引入了一种新颖的放大镜装置,该装置还能够可视化5-ALA荧光。
    因此,本研究的目的是比较常规荧光显微镜和新型放大镜装置之间检测到的PpIX浓度。
    我们使用不同PpIX浓度的荧光体模进行常规荧光显微镜和新型放大镜装置之间的比较。为此,我们创建荧光图像使用激发光源的传统荧光显微镜和放大镜装置与两种可用的背景照明模式(低和高)。随后,5名独立的神经外科医师确定了根据每种技术检测到的最低PpIX浓度.
    使用常规的荧光显微镜,PpIX最低检测浓度中位数为0.16μg/ml(范围:0.15~0.17μg/ml).通过放大镜装置,对于高模式和低模式,PpIX的最小可检测浓度中位数为0.12μg/ml(范围:0.10至0.12μg/ml)和0.08μg/ml(范围:0.07至0.08μg/ml),分别。总之,与常规荧光显微镜相比,使用放大镜装置的最低可检测PpIX浓度显著较低(p=0.007).
    我们的数据表明,新型放大镜装置能够以高灵敏度可视化5-ALA荧光,因此将来可能成为可视化特定CNS肿瘤的强大工具。
    The 5-aminolevulinic acid (5-ALA) fluorescence technique is now widely applied for intraoperative visualization of specific central nervous system (CNS) tumors. Previous technical implementations of this technique have relied on specifically modified surgical microscopes to visualize intratumoral fluorescent protoporphyrin (PpIX). While this approach evidently allows for reliable intraoperative tumor visualization, it requires the availability of specifically modified surgical microscopes and their use even in cases where the operating neurosurgeon would prefer to use surgical loupes. Recently, a novel loupe device was introduced that is also capable of visualizing 5-ALA fluorescence.
    The aim of this study was therefore to compare the detected PpIX concentrations between the conventional fluorescence microscope and the novel loupe device.
    We used fluorescence phantoms of different PpIX concentrations for comparison between a conventional fluorescence microscope and the novel loupe device. For this purpose, we created fluorescence images using the excitation light sources of the conventional fluorescence microscope and the loupe device with both available background illumination modes (low and high). Subsequently, the minimal detectable PpIX concentrations according to each technique were determined by five independent neurosurgeons.
    Using the conventional fluorescence microscope, the median minimal detectable PpIX concentration was 0.16  μg/ml (range: 0.15 to 0.17  μg/ml). By the loupe device, the median minimal detectable PpIX concentration was 0.12  μg/ml (range: 0.10 to 0.12  μg/ml) and 0.08  μg/ml (range: 0.07 to 0.08  μg/ml) for the high- and low-modes, respectively. Altogether, the minimal detectable PpIX concentrations were significantly lower using the loupe device compared to the conventional fluorescence microscope (p=0.007).
    Our data indicate that the novel loupe device is able to visualize 5-ALA fluorescence with high sensitivity and thus might serve as a powerful tool for visualization of specific CNS tumors in the future.
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  • 文章类型: Journal Article
    This study aimed to evaluate the effects of a new photodynamic protocol (ALAD-PDT) on primary human osteoblasts (hOBs). The ALAD-PDT protocol consists of a heat-sensitive gel with 5% 5-delta aminolevulinic acid commercialized as Aladent (ALAD), combined with 630 nm LED. For this purpose, the hOBs, explanted from human mandible bone fragments, were used and treated with different ALAD concentrations (10%, 50%, 100% v/v) incubated for 45 min and immediately afterwards irradiated with a 630 nm LED device for 7 min. The untreated and unirradiated cells were considered control (CTRL). The cellular accumulation of the photosensitizer protoporphyrin IX (PpIX), the proliferation, the alkaline phosphatase (ALP) activity, and the calcium deposition were assessed. All concentrations (10, 50, 100%) determined a significant increment of PpIX immediately after 45 min of incubation (0 h) with the highest peak by ALAD (100%). The consequent 7 min of light irradiation caused a slight decrease in PpIX. At 48 h and 72 h, any increment of PpIX was observed. The concentration 100% associated with LED significantly increased hOB proliferation at 48 h (+ 46.83%) and 72 h (+ 127.75%). The 50% and 100% concentrations in combination to the red light also stimulated the ALP activity, + 12.910% and + 14.014% respectively. The concentration 100% with and without LED was selected for the assessment of calcium deposition. After LED irradiation, a significant increase in calcium deposition was observed and quantified (+ 72.33%). In conclusion, the ALAD-PDT enhanced proliferation, the ALP activity, and mineralized deposition of human oral osteoblasts, highlighting a promising potential for bone tissue regeneration.
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  • 文章类型: Journal Article
    背景:使用氨基酮戊酸(ALA)的抗微生物光动力疗法(aPDT)是抗生素疗法的有希望的替代方案。ALA给药诱导原卟啉IX(PpIX)在细菌中的积累,并且累积的PpIX的光激发产生对细菌毒性的单线态氧。几个因素,包括药物管理和光照条件,有助于抗生素的效果。对于临床实践中的有效aPDT,应适度确定此类多个参数。
    方法:构建了预测ALA-aPDT在临床条件下的细菌动力学的数学模型。应用药代动力学(PK-PD)方法,广泛用于抗菌药物评估,通过将杀菌率定义为当光照射细菌中的PpIX时产生的单线态氧的浓度来计数活细菌。
    结果:ALA-aPDT对铜绿假单胞菌的体外实验结果证明了PK-PD模型的有效性。杀伤率是有上限的,当光剂量相同时,较低的功率密度长照射时间可以抑制活菌数。
    结论:本研究提出了基于PK-PD模型的ALA-aPDT细菌生存力变化模型,通过使用PA的体外实验,可以表达细菌活力随光敏物质浓度和光照功率密度的变化。将需要用其他革兰氏阴性和革兰氏阳性菌株进一步验证PK-PD模型。
    BACKGROUND: Antimicrobial photodynamic therapy (aPDT) using aminolaevulinic acid (ALA) is a promising alternative to antibiotic therapy. ALA administration induces protoporphyrin IX (PpIX) accumulation in bacteria, and light excitation of the accumulated PpIX generates singlet oxygen to bacterial toxicity. Several factors, including drug administration and light irradiation conditions, contribute to the antibiotic effect. Such multiple parameters should be determined moderately for effective aPDT in clinical practice.
    METHODS: A mathematical model to predict bacterial dynamics in ALA-aPDT following clinical conditions was constructed. Applying a pharmacokineticspharmacodynamics (PK-PD) approach, which is widely used in antimicrobial drug evaluation, viable bacteria count by defining the bactericidal rate as the concentration of singlet oxygen produced when PpIX in bacteria is irradiated by light.
    RESULTS: The in vitro experimental results of ALA-aPDT for Pseudomonas aeruginosa demonstrated the PK-PD model validity. The killing rate has an upper limit, and the lower power density for a long irradiation time can suppress the viable bacteria number when the light dosages are the same.
    CONCLUSIONS: This study proposed a model of bacterial viability change in ALA-aPDT based on the PK-PD model and confirmed, by in vitro experiments using PA, that the variation of bacterial viability with light-sensitive substance concentration and light irradiation power densities could be expressed. Further validation of the PK-PD model with other gram negative and gram positive strains will be needed.
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  • 文章类型: Journal Article
    背景:膀胱癌是发达国家常见的恶性疾病。使用尿细胞学检查早期发现恶性肿瘤很重要。基于5-氨基乙酰丙酸(ALA)的光动力诊断(ALA-PDD)尚未常规用于尿液细胞学分析,尽管在膀胱镜检查中已被广泛接受用于肿瘤病变标记。
    方法:本研究共纳入8名志愿者。用ALA诱导的原卟啉IX(ALA-PpIX)对膀胱洗涤液和随机尿液中的沉积物悬浮液细胞进行染色,并通过ImageJ分析ALA-PpIX的荧光强度。
    结果:荧光强度的截止值为每个像素90.260。所提出的方案为评估提供了客观的荧光强度。敏感性为0.931,特异性为1.000。
    结论:对膀胱洗液和随机尿液的细胞悬液中的可疑细胞进行ALA-PpIX染色。将ImageJ应用于染色细胞的荧光强度的客观测量。阳性结果的截止值为每个像素90.260。因此,本研究提出的方案为提高尿细胞学分析的准确性提供了一种潜在的手段.
    BACKGROUND: Bladder cancer is a common malignant disease in developed countries. Early detection of malignancy is important using urine cytology. The 5-aminolevulinic acid (ALA)-based photodynamic diagnosis (ALA-PDD) has not been routinely applied in urine cytology analysis yet, although it has been well accepted for tumor lesion marking in cystoscopy.
    METHODS: A total of eight volunteers were enrolled in this study. The cells of sediment suspension from bladder washing fluid and random urine were stained by ALA-induced protoporphyrin IX (ALA-PpIX) and the fluorescent intensity of ALA-PpIX was analyzed by ImageJ.
    RESULTS: The cutoff value of fluorescent intensity was 90.260 per pixel. The proposed protocol provided an objective fluorescent intensity for evaluation. Sensitivity was 0.931 and specificity was 1.000.
    CONCLUSIONS: The staining procedure applied was ALA-PpIX for suspicious cells in the cellular suspension from bladder wash fluid and random urine. ImageJ was applied to the objective measurement for the fluorescent intensity of the stained cells. The cutoff value for the positive result was 90.260 per pixel. Therefore, the protocol proposed in this study provides a potential means to enhance accuracy for urine cytology analysis.
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  • 文章类型: Journal Article
    背景:犬乳腺肿瘤(CMGT)是异质性肿瘤,与人类乳腺癌具有许多相似的特征。尽管目前的治疗方案有所改善,在CMGTs的治疗中,需要新的治疗方式来有效地杀死肿瘤细胞而没有一般毒性。光动力疗法(PDT)是一种有前途的癌症治疗方法。然而,有一项有限的研究评估了PDT治疗CMGT的疗效.
    方法:在这种情况下,我们,第一次,通过不同的分子分析研究了5-氨基酮戊酸(5-ALA)介导的PDT在6和12J/cm2下在两种不同亚型[肾小管乳头状癌(TPC)和癌肉瘤(CS)]细胞中的治疗潜力。通过细胞内PpIX水平分析5-ALA/PDT对这些细胞的细胞毒性作用,WST-1和ROS分析。此外,5-ALA/PDT介导的细胞凋亡效应对TPC和CS细胞的潜在分子机制进行了评估膜联蛋白V,AO/PI,RT-PCR和蛋白质印迹分析。
    结果:照射后的5-ALA/PDT处理大大抑制了TPC和CS细胞的活力(p<0.01),并通过升高的ROS水平引起凋亡死亡,Caspase-9和Caspase-3的激活以及Bax的过表达。然而,TPC和CS细胞对5-ALA/PDT的反应不同。
    结论:我们的初步体外研究结果为TPC和CS细胞中5-ALA/PDT介导的凋亡的分子机制提供了新的见解。然而,CMGT细胞对5-ALA/PDT的治疗反应有限。
    BACKGROUND: Canine mammary gland tumors (CMGTs) are heterogeneous tumors and share many similar features with human breast cancer. Despite the improvement of current treatment options, new treatment modalities are required to effectively kill tumor cells without general toxicity in the treatment of CMGTs. Photodynamic therapy (PDT) is a promising method for cancer treatment. However, there is a limited study evaluating the therapeutic efficacy of PDT in the treatment of CMGTs.
    METHODS: In this context, we, for the first time, investigated the therapeutic potential of 5-aminolaevulinic acid (5-ALA) mediated PDT at 6 and 12 J/cm2 in two different subtypes [Tubulopapillary carcinoma (TPC) and carcinosarcoma (CS)] cells via different molecular analysis. The cytotoxic effects of 5-ALA/PDT on these cells were analyzed by intracellular PpIX level, WST-1 and ROS analysis. Furthermore, the underlying moleculer mechanism of 5-ALA/PDT mediated apoptotic effects on TPC and CS cells were evaluated Annexin V, AO/PI, RT-PCR and western blot analysis.
    RESULTS: The 5-ALA/PDT treatment upon irradiation considerably inhibited the viability of both TPC and CS cells (p<0.01) and caused apoptotic death through elevated ROS levels, the activation of Caspase-9, and Caspase-3, and the overexpression of Bax. However, the response of TPC and CS cells to 5-ALA/PDT was different.
    CONCLUSIONS: Our preliminary in vitro findings provide novel insights into the molecular mechanisms underlying 5-ALA/PDT mediated apoptosis in both TPC and CS cells. However, the therapeutic response of CMGT cells to 5-ALA/PDT is limited.
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  • 文章类型: Journal Article
    由SARS-CoV-2冠状病毒引起的2019年冠状病毒病(COVID-19)在几周内迅速在世界各地传播。目前为在COVID-19中使用抗病毒药物制定的大多数建议都是在大流行的最初浪潮中制定的,当资源有限,行政或务实标准优先时。用于治疗COVID-19的药物的选择是从批准用于医疗用途的药物中进行的。COVID-19是一个严重的公共卫生问题,寻找可以在不同阶段缓解感染患者疾病的药物仍然是必要的。因此,寻找具有抑制和/或杀病毒活性的有效药物是一项至关重要的任务。病毒的辅助蛋白在疾病的发病机理中起着重要作用,因为它们调节宿主的免疫反应。本文研究了SARS-CoV-2辅助蛋白ORF10与大杂环化合物-原卟啉IXd.m.e.的相互作用,Fe(III)原卟啉d.m.e.和5,10,15,20-四(3'-吡啶基)氯四碘化物,它们是潜在的抑制剂和杀病毒剂。SARS-CoV-2ORF10蛋白对氯色素的亲和力最高,与蛋白质的α结构区域疏水结合。原卟啉能够与能量接近的ORF10形成几种配合物,具有α-和β-分子识别特征,而Fe(III)原卟啉形成络合物,卟啉大环的方向平行于ORF10α-螺旋。考虑到与ORF10的相互作用的性质,已经提出了氯色素在光暴露时可能具有杀病毒活性。SARS-CoV-2ORF10蛋白在大肠杆菌细胞中表达,合成了大杂环化合物,结构得到确认。通过光谱方法研究了大环与ORF10之间的相互作用。实验数据证实了计算机模拟研究的结果。
    The coronavirus disease 2019 (COVID-19) caused by the SARS-CoV-2 coronavirus has spread rapidly around the world in a matter of weeks. Most of the current recommendations developed for the use of antivirals in COVID-19 were developed during the initial waves of the pandemic, when resources were limited and administrative or pragmatic criteria took precedence. The choice of drugs for the treatment of COVID-19 was carried out from drugs approved for medical use. COVID-19 is a serious public health problem and the search for drugs that can relieve the disease in infected patients at various stages is still necessary. Therefore, the search for effective drugs with inhibitory and/or virucidal activity is a paramount task. Accessory proteins of the virus play a significant role in the pathogenesis of the disease, as they modulate the host\'s immune response. This paper studied the interaction of one of the SARS-CoV-2 accessory proteins ORF10 with macroheterocyclic compounds - protoporphyrin IX d.m.e., Fe(III)protoporphyrin d.m.e. and 5,10,15,20-tetrakis(3\'-pyridyl)chlorin tetraiodide, which are potential inhibitors and virucidal agents. The SARS-CoV-2 ORF10 protein shows the highest affinity for Chlorin, which binds hydrophobically to the alpha structured region of the protein. Protoporphyrin is able to form several complexes with ORF10 close in energy, with alpha- and beta-molecular recognition features, while Fe(III)protoporphyrin forms complexes with the orientation of the porphyrin macrocycle parallel to the ORF10 alpha-helix. Taking into account the nature of the interaction with ORF10, it has been suggested that Chlorin may have virucidal activity upon photoexposure. The SARS-CoV-2 ORF10 protein was expressed in Escherichia coli cells, macroheterocyclic compounds were synthesized, and the structure was confirmed. The interaction between macrocycles with ORF10 was studied by spectral methods. The results of in silico studies were confirmed by experimental data.
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  • 文章类型: Journal Article
    作为一种重要的无酶放大器,杂交链式反应(HCR)使用ssDNA来触发底物发夹之间的循环置换相互作用,并最终形成延长的dsDNA串联体混合物。在许多情况下,提供信号探头或高级功能,额外的寡核苷酸(称为发夹尾)必须在经典的HCR发夹底物上延伸,但是通过这样做,HCR组装效率和信噪比(SNR)可能会严重降低。在这篇文章中,提供了一个合理和通用的模型,可以指导HCR功能化和信号效率的研究。我们合理地设计了一个四发夹模型HCR系统(4H-HCR),其中一个或多个发夹底物附加了额外的尾巴作为信号探针。HCR组装后,据推测,两个相邻的尾巴整合到一个完整的G-四链体结构中,为组装提供证据或信号。已经进行了系统的研究,以揭示“尾部设计”与装配效率和SNR之间的关系。已为传统电泳和G-四链体增强的荧光信号提供了指导优化组装和信号的清晰设计规则集。重要的是,固态纳米孔单分子检测已被创新性地引入并推荐作为传统G-四链体信号的“抗风险”和“互利”读数。纳米孔检测可以提供清晰的信号区分前后的HCR反应,特别是当传统的G-四重增强信号仅提供低信噪比时。G-四链体,反过来,可以通过增加HCR产物的直径来增强纳米孔信号幅度。
    As an important enzyme-free amplifier, the hybridization chain reaction (HCR) uses an ssDNA to trigger cycled displacement interactions between substrate hairpins and finally form elongated dsDNA concatamer mixtures. In many cases, to provide a signal probe or advanced function, additional oligonucleotides (named hairpin tails) have to be extended upon classic HCR hairpin substrates, but by doing so the HCR assembly efficiency and signal-to-noise ratio (SNR) may get seriously reduced. In this Article, a rational and general model that may guide the study on HCR functionalization and signaling efficiency is provided. We rationally design a four-hairpin model HCR system (4H-HCR) in which one or more hairpin substrates are appended with additional tails as a signaling probe. After HCR assembly, two adjacent tails are supposedly integrating into a full G-quadruplex structure to provide the evidence or signal for the assembly. A systematic study has been applied to reveal the relationship between the \"tail-design\" with assembly efficiency and SNR. A clear design rule-set guiding the optimized assembly and signal has been provided for traditional electrophoresis and G-quadruplex-enhanced fluorescence signal. Importantly, solid-state nanopore single molecular detection has been innovatively introduced and recommended as an \"antirisk\" and \"mutual benefit\" readout to traditional G-quadruplex signaling. Nanopore detection can provide a clear signal distinguished before and after the HCR reaction, especially when the traditional G-quadruplex-enhanced signal only provides low SNR. The G-quadruplex, in turn, may enhance the nanopore signal amplitude via increasing the diameter of the HCR products.
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  • 文章类型: Journal Article
    由冠状病毒(SARS-CoV2)引起的大流行性传染病(Covid-19)正在全球迅速传播。新冠肺炎对人们的健康和生命造成了不可挽回的伤害。它还对世界上大多数国家的经济产生负面的金融影响。在这方面,创造旨在对抗这种疾病的药物的问题尤其严重。在这项工作中,利用分子对接技术研究了23种化合物与QRF3aSARS-CoV2的对接。进行的计算机模拟使鉴定能够发挥潜在抑制和杀病毒作用的前导化合物成为可能。主要化合物包括二氢卟啉(PDT中使用的药物),铁(III)原卟啉(内源性卟啉),和四蒽醌卟啉(一种外源物质)。考虑到配体在QRF3aSARS-CoV2中的定位,我们假设了它们对Covid-19发病机理的影响。二氢卟啉的相互作用,通过荧光和紫外可见光谱研究了铁(III)和原卟啉与病毒蛋白ORF3a的关系。获得的实验结果证实了分子对接的数据。结果表明,病毒蛋白与内源性卟啉和二氢卟啉结合,此外,二氢卟啉是内源性卟啉的竞争性配体。应该考虑将氯苷作为一种有希望的再利用药物。
    The pandemic infectious disease (Covid-19) caused by the coronavirus (SARS-CoV2) is spreading rapidly around the world. Covid-19 does an irreparable harm to the health and life of people. It also has a negative financial impact on the economies of most countries of the world. In this regard, the issue of creating drugs aimed at combating this disease is especially acute. In this work, molecular docking was used to study the docking of 23 compounds with QRF3a SARS-CoV2. The performed in silico modeling made it possible to identify leading compounds capable of exerting a potential inhibitory and virucidal effect. The leading compounds include chlorin (a drug used in PDT), iron(III)protoporphyrin (endogenous porphyrin), and tetraanthraquinone porphyrazine (an exogenous substance). Having taken into consideration the localization of ligands in the QRF3a SARS-CoV2, we have made an assumption about their influence on the pathogenesis of Covid-19. The interaction of chlorin, iron(III)protoporphyrin and protoporphyrin with the viral protein ORF3a were studied by fluorescence and UV-Vis spectroscopy. The obtained experimental results confirm the data of molecular docking. The results showed that a viral protein binds to endogenous porphyrins and chlorins, moreover, chlorin is a competitive ligand for endogenous porphyrins. Chlorin should be considered as a promising drug for repurposing.
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