Polygenic Risk Scores

多基因风险评分
  • 文章类型: Journal Article
    精神病学遗传学的最新进展使使用多基因风险评分(PRS)来估计精神疾病的遗传风险。然而,PRS在儿童和青少年精神病学中的潜在应用引起了人们的关注.这项研究深入检查了儿童和青少年精神病医生(CAP)对PRS在精神病学中使用的态度。我们对拥有遗传学专业知识的美国CAP(n=29)进行了半结构化访谈。大多数CAP表明PRS在其当前形式中具有有限的临床效用,并且还没有准备好临床实施。大多数临床医生表示,目前没有什么能激励他们产生PRS;然而,注意到一些例外情况(例如,父母/家庭请求)。临床医生谈到了与订购有关的挑战,口译,并向患者和家属解释PRS。CAP对这些信息可能被患者误解或滥用表示担忧,家庭,临床医生,以及保险公司等外部实体。最后,一些CAP指出,PRS可能导致精神疾病的污名化增加,在极端情况下,可以用来支持优生学。随着PRS测试的增加,这将是至关重要的检查CAP和其他利益相关者的意见,以确保负责任地实施这项技术。
    Recent advances in psychiatric genetics have enabled the use of polygenic risk scores (PRS) to estimate genetic risk for psychiatric disorders. However, the potential use of PRS in child and adolescent psychiatry has raised concerns. This study provides an in-depth examination of attitudes among child and adolescent psychiatrists (CAP) regarding the use of PRS in psychiatry. We conducted semi-structured interviews with U.S.-based CAP (n = 29) who possess expertise in genetics. The majority of CAP indicated that PRS have limited clinical utility in their current form and are not ready for clinical implementation. Most clinicians stated that nothing would motivate them to generate PRS at present; however, some exceptions were noted (e.g., parent/family request). Clinicians spoke to challenges related to ordering, interpreting, and explaining PRS to patients and families. CAP raised concerns regarding the potential for this information to be misinterpreted or misused by patients, families, clinicians, and outside entities such as insurance companies. Finally, some CAP noted that PRS may lead to increased stigmatization of psychiatric disorders, and at the extreme, could be used to support eugenics. As PRS testing increases, it will be critical to examine CAP and other stakeholders\' views to ensure responsible implementation of this technology.
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  • 文章类型: Journal Article
    风湿性疾病(RD)的特征是自身免疫和自身炎症,并且由于多种遗传的相互作用而被认为是复杂的,环境,和生活方式因素在其发病机理中的作用。全基因组关联研究(GWAS)的快速发展使得能够鉴定与RD易感性相关的许多单核苷酸多态性(SNP)。基于这些SNP,多基因风险评分(PRS)已成为量化该疾病组遗传风险的有前景的工具.本章回顾了PRS在评估RD风险方面的现状,并讨论了它们通过区分不同RD的能力来提高这些复杂疾病的诊断准确性的潜力。PRS对各种RD表现出很高的辨别能力,并显示出潜在的临床实用性。随着GWAS的不断发展,PRS有望通过整合遗传,实现更精确的风险分层。环境,和生活方式因素,从而完善个人风险预测并推进疾病管理策略。
    Rheumatic diseases (RDs) are characterized by autoimmunity and autoinflammation and are recognized as complex due to the interplay of multiple genetic, environmental, and lifestyle factors in their pathogenesis. The rapid advancement of genome-wide association studies (GWASs) has enabled the identification of numerous single nucleotide polymorphisms (SNPs) associated with RD susceptibility. Based on these SNPs, polygenic risk scores (PRSs) have emerged as promising tools for quantifying genetic risk in this disease group. This chapter reviews the current status of PRSs in assessing the risk of RDs and discusses their potential to improve the accuracy of the diagnosis of these complex diseases through their ability to discriminate among different RDs. PRSs demonstrate a high discriminatory capacity for various RDs and show potential clinical utility. As GWASs continue to evolve, PRSs are expected to enable more precise risk stratification by integrating genetic, environmental, and lifestyle factors, thereby refining individual risk predictions and advancing disease management strategies.
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  • 文章类型: Journal Article
    背景:已经报道了代谢状态和代谢变化与心血管结局风险之间的关联。然而,遗传易感性在这些关联背后的作用仍未被探索.我们的目的是检查代谢状态,代谢转变,和遗传易感性共同影响不同体重指数(BMI)类别的心血管结局和全因死亡率.
    方法:在我们对英国生物库的分析中,基线时,我们共纳入481,576名参与者(平均年龄:56.55岁;男性:45.9%).代谢健康(MH)状态定义为存在<3个异常成分(腰部情况、血压,血糖,甘油三酯,和高密度脂蛋白胆固醇)。正常体重,超重,肥胖定义为18.5≤BMI<25kg/m2,25≤BMI<30kg/m2,BMI≥30kg/m2。使用多基因风险评分(PRS)估计遗传易感性。进行Cox回归以评估代谢状态的关联,代谢转变,和PRS与不同BMI类别的心血管结局和全因死亡率。
    结果:在14.38年的中位随访中,31,883(7.3%)全因死亡,8133例(1.8%)心血管疾病(CVD)死亡,记录了67,260例(14.8%)CVD病例。在那些具有高PRS的人中,与代谢不健康的肥胖人群相比,代谢健康超重人群的全因死亡率(风险比[HR]0.70;95%置信区间[CI]0.65,0.76)和CVD死亡率(HR0.57;95%CI0.50,0.64)风险最低。在中度和低度PRS组中,有益的关联似乎更大。代谢健康正常体重的个体患CVD的风险最低(HR0.54;95%CI0.51,0.57)。此外,不同BMI类别的代谢状态和PRS与心血管结局和全因死亡率的负相关在65岁以下的个体中更为显著(P交互作用<0.05).此外,在BMI类别中,观察到代谢转变和PRS对这些结局的综合保护作用.
    结论:MH状态和低PRS与所有BMI类别的不良心血管结局和全因死亡率的较低风险相关。这种保护作用在65岁以下的个体中尤其明显。需要进一步的研究来确认不同人群的这些发现,并调查所涉及的潜在机制。
    BACKGROUND: Associations between metabolic status and metabolic changes with the risk of cardiovascular outcomes have been reported. However, the role of genetic susceptibility underlying these associations remains unexplored. We aimed to examine how metabolic status, metabolic transitions, and genetic susceptibility collectively impact cardiovascular outcomes and all-cause mortality across diverse body mass index (BMI) categories.
    METHODS: In our analysis of the UK Biobank, we included a total of 481,576 participants (mean age: 56.55; male: 45.9%) at baseline. Metabolically healthy (MH) status was defined by the presence of < 3 abnormal components (waist circumstance, blood pressure, blood glucose, triglycerides, and high-density lipoprotein cholesterol). Normal weight, overweight, and obesity were defined as 18.5 ≤ BMI < 25 kg/m2, 25 ≤ BMI < 30 kg/m2, and BMI ≥ 30 kg/m2, respectively. Genetic predisposition was estimated using the polygenic risk score (PRS). Cox regressions were performed to evaluate the associations of metabolic status, metabolic transitions, and PRS with cardiovascular outcomes and all-cause mortality across BMI categories.
    RESULTS: During a median follow-up of 14.38 years, 31,883 (7.3%) all-cause deaths, 8133 (1.8%) cardiovascular disease (CVD) deaths, and 67,260 (14.8%) CVD cases were documented. Among those with a high PRS, individuals classified as metabolically healthy overweight had the lowest risk of all-cause mortality (hazard ratios [HR] 0.70; 95% confidence interval [CI] 0.65, 0.76) and CVD mortality (HR 0.57; 95% CI 0.50, 0.64) compared to those who were metabolically unhealthy obesity, with the beneficial associations appearing to be greater in the moderate and low PRS groups. Individuals who were metabolically healthy normal weight had the lowest risk of CVD morbidity (HR 0.54; 95% CI 0.51, 0.57). Furthermore, the inverse associations of metabolic status and PRS with cardiovascular outcomes and all-cause mortality across BMI categories were more pronounced among individuals younger than 65 years (Pinteraction < 0.05). Additionally, the combined protective effects of metabolic transitions and PRS on these outcomes among BMI categories were observed.
    CONCLUSIONS: MH status and a low PRS are associated with a lower risk of adverse cardiovascular outcomes and all-cause mortality across all BMI categories. This protective effect is particularly pronounced in individuals younger than 65 years. Further research is required to confirm these findings in diverse populations and to investigate the underlying mechanisms involved.
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  • 文章类型: Journal Article
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  • 文章类型: Journal Article
    目的:重度吸烟与退休风险之间的因果关系程度尚待确定。为了克服大量吸烟行为的内生性,我们采用了一种新的方法,利用大量吸烟的遗传倾向,以多基因风险评分(PGS)衡量,在孟德尔随机化方法中。
    方法:来自英国老龄化纵向研究的8164名参与者(平均年龄68.86岁)有关于吸烟行为的完整数据,就业和大量吸烟PGS。大量吸烟被索引为每天至少吸烟20支。时间至事件孟德尔随机化(MR)分析,使用互补的log-log(cloglog)链接功能,被用来模拟退休风险。
    结果:我们的结果表明,成为重度吸烟者会显着增加退休风险(β=1.324,标准误差=0.622,p<0.05)。考虑到从不吸烟者,结果对于一系列检查和安慰剂分析是可靠的。
    结论:总体而言,我们的发现支持了从大量吸烟到提前退休的因果途径.
    OBJECTIVE: The extent to which heavy smoking and retirement risk are causally related remains to be determined. To overcome the endogeneity of heavy smoking behaviour, we employed a novel approach by exploiting the genetic predisposition to heavy smoking, as measured with a polygenic risk score (PGS), in a Mendelian Randomisation approach.
    METHODS: 8164 participants (mean age 68.86 years) from the English Longitudinal Study of Ageing had complete data on smoking behaviour, employment and a heavy smoking PGS. Heavy smoking was indexed as smoking at least 20 cigarettes a day. A time-to-event Mendelian Randomization (MR) analysis, using a complementary log-log (cloglog) link function, was employed to model the retirement risk.
    RESULTS: Our results show that being a heavy smoker significantly increases the risk of retirement (β = 1.324, standard error = 0.622, p < 0.05). Results were robust to a battery of checks and a placebo analysis considering the never-smokers.
    CONCLUSIONS: Overall, our findings support a causal pathway from heavy smoking to earlier retirement.
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  • 文章类型: Journal Article
    最近,在通过胚胎选择降低多基因疾病风险的前提下,引入了多基因风险评分在胚胎筛查中的应用(PGT-P).然而,它受到了广泛的批评:被认为是“技术驱动的”,而不是“基于证据的”,存在对其有效性的担忧,实用程序,伦理,和社会影响。因此,需要仔细考虑其科学基础和批评。然而,看到PGT-P已经在某些设置中提供,需要解决更多问题,为了对PGT-P的各个方面进行尽职调查通过检查PGT-P临床引入的复杂性,我们首先讨论PGT-P是否可以负责任地实施,如果PGT-P在临床上实施,需要解决哪些要素,以及随后如何设想其用户的咨询和决策。通过解剖这些元素,我们概述了PGT-P的重要实践问题,并强调了我们认为尚未给予足够重视的PGT-P要素。这些问题和元素例如与潜在目标群体有关,范围,和PGT-P的决策可能性我们提出的方面对于科学界和决策者制定PGT-P的准则和/或道德框架至关重要。
    Recently, the use of polygenic risk scores in embryo screening (PGT-P) has been introduced on the premise of reducing polygenic disease risk through embryo selection. However, it has been met with extensive critique: considered \"technology-driven\" rather than \"evidence-based\", concerns exist about its validity, utility, ethics, and societal effects. Its scientific foundations and criticisms thus need to be carefully considered. However, seeing as PGT-P is already offered in some settings, further questions need to be addressed, in order to give due diligence to various aspects of PGT-P. By examining the complexities of clinical introduction of PGT-P, we discuss whether PGT-P could be responsibly implemented in the first place, what elements need to be addressed if PGT-P is clinically implemented, and subsequently how counselling and decision-making of its users could be envisaged. By dissecting these elements, we provide an overview of important practical questions of PGT-P and emphasize elements of PGT-P that we think have yet to be given sufficient attention. These questions and elements are for example related to the potential target group, scope, and decision-making possibilities of PGT-P. The aspects we raise are crucial to consider by the scientific community and policy makers for the development of guidelines and/or an ethical framework for PGT-P.
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    文章类型: Journal Article
    Despite screening programmes, numerous clinical studies and new breast imaging techniques, breast cancer incidence for women continues to rise. The arrival of predictive and personalized medicine could clearly redefine our screening recommendations. One promising approach to improving screening would be to use tools to predict the risk of developing breast cancer, including polygenic risk scores (PRS). This approach will enable us to offer women risk-based screening by adapting the frequency, type and age of screening. This article reviews some definitions of the PRS and breast cancer screening. We also explain the risk assessment models that have been developed and the various studies underway on personalized screening.
    Malgré les programmes de dépistage, les nombreuses études cliniques et les nouvelles techniques d’imagerie mammaire, l’incidence du cancer du sein chez la femme continue à augmenter. L’arrivée de la médecine prédictive et personnalisée pourrait clairement redéfinir nos recommandations de dépistage. Une des approches prometteuses pour améliorer le dépistage serait d’utiliser les outils de prédiction du risque de développer un cancer du sein en incluant les scores de risques polygéniques (PRS). Cette approche permettra de proposer aux femmes un dépistage basé sur le risque en adaptant la fréquence des examens ainsi que le type et l’âge du début du dépistage. Cet article reprend quelques définitions concernant le PRS et le dépistage du cancer sein. Nous allons passer en revue les modèles de prédiction de risque qui ont été développés et les différentes études en cours sur le dépistage personnalisé.
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  • 文章类型: Journal Article
    许多但不是所有的双相情感障碍患者由于严重的情绪发作需要住院治疗。同样,一些但并非所有患者都经历了超出急性情绪发作的长期职业功能障碍。尚不清楚双相情感障碍的这些不同结果是否由不同的多基因谱驱动。这里,我们评估了主要精神疾病的多基因评分(PGSs)和受教育程度与双相情感障碍患者的职业功能和精神科住院率的关联.
    对4,782名双相情感障碍患者和2,963名对照受试者进行了基因分型,并与瑞典国家登记册相关联。使用至少10年登记数据的纵向测量得出不就业年份的百分比,长期病假的百分比,和平均每年精神病住院人数。序数回归用于测试结果与双相情感障碍的PGS之间的关联。精神分裂症,重度抑郁症,注意缺陷多动障碍(ADHD),和教育程度。使用来自双相情感障碍研究网络队列(N=4,219)的数据对住院患者进行复制分析。
    双相情感障碍的长期病假和失业与精神分裂症的PGS显著相关,多动症,重度抑郁症,和教育程度,但不能用PGS治疗双相情感障碍.相比之下,每年住院人数与双相情感障碍和精神分裂症的较高PGS相关,但不是与其他发电系统。
    双相情感障碍的严重程度(以住院人数为指标)与长期职业功能障碍不同的多基因特征相关。这些发现具有临床意义,这表明减轻职业功能障碍需要采取干预措施,而不是预防情绪发作的干预措施。
    UNASSIGNED: Many but not all persons with bipolar disorder require hospital care because of severe mood episodes. Likewise, some but not all patients experience long-term occupational dysfunction that extends beyond acute mood episodes. It is not known whether these dissimilar outcomes of bipolar disorder are driven by different polygenic profiles. Here, polygenic scores (PGSs) for major psychiatric disorders and educational attainment were assessed for associations with occupational functioning and psychiatric hospital admissions in bipolar disorder.
    UNASSIGNED: A total of 4,782 patients with bipolar disorder and 2,963 control subjects were genotyped and linked to Swedish national registers. Longitudinal measures from at least 10 years of registry data were used to derive percentage of years without employment, percentage of years with long-term sick leave, and mean number of psychiatric hospital admissions per year. Ordinal regression was used to test associations between outcomes and PGSs for bipolar disorder, schizophrenia, major depressive disorder, attention deficit hyperactivity disorder (ADHD), and educational attainment. Replication analyses of hospital admissions were conducted with data from the Bipolar Disorder Research Network cohort (N=4,219).
    UNASSIGNED: Long-term sick leave and unemployment in bipolar disorder were significantly associated with PGSs for schizophrenia, ADHD, major depressive disorder, and educational attainment, but not with the PGS for bipolar disorder. By contrast, the number of hospital admissions per year was associated with higher PGSs for bipolar disorder and schizophrenia, but not with the other PGSs.
    UNASSIGNED: Bipolar disorder severity (indexed by hospital admissions) was associated with a different polygenic profile than long-term occupational dysfunction. These findings have clinical implications, suggesting that mitigating occupational dysfunction requires interventions other than those deployed to prevent mood episodes.
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  • 文章类型: Journal Article
    目的:心血管疾病多基因风险评分(CVD-PRS)可以将个体分为不同的心血管风险类别,但在临床风险评分中加入CVD-PRS是否能改善现实临床环境中风险增加个体的识别,目前尚不清楚.
    方法:遗传学和血管健康检查研究(GENVASC)被纳入英国国家卫生服务健康检查(NHSHC)计划,该计划邀请年龄在40-74岁之间,没有已知CVD的个体参加英国一般实践的评估,其中测量了CVD危险因素并计算了CVD风险评分(QRISK2)。2012-2020年,44,141人(55.7%为女性,15.8%的非白人)在英格兰两个县的147个参与实践中参加了NHSHC。当195个人(病例)遭受重大CVD事件(CVD死亡,心肌梗死或急性冠脉综合征,冠状动脉血运重建,stroke),确定了396个具有相似风险特征的倾向匹配对照,和巢式病例对照遗传学研究,以综合风险工具(IRT)与QRISK2相结合的形式在QRISK2中添加CVD-PRS是否会在NHSHC时发现更多个体处于高风险(QRISK210年CVD风险≥10%),与单独的QRISK2相比。
    结果:与对照组相比,标准化CVD-PRS的分布在病例中存在显着差异(病例平均得分为.32;对照组,-.18,P=8.28×10-9)。QRISK2确定61.5%(95%置信区间[CI]:54.3%-68.4%)随后发生重大CVD事件的个体在其NHSHC中处于高风险,而QRISK2和IRT的组合确定为68.7%(95%CI:61.7%-75.2%),相对增加11.7%(P=1×10-4)。与对照组相比,被向上分类的比值比(OR)为2.41(95%CI:1.03-5.64,P=0.031)。在40-54岁的人中,QRISK2确定了26.0%(95%CI:16.5%-37.6%)发生重大CVD事件的患者,而QRISK2和IRT的组合确定为38.4%(95%CI:27.2%-50.5%),表明较年轻年龄组的相对增加47.7%(P=0.001)。QRISK2和IRT的组合增加了女性与男性相似的额外病例的比例,与白人种族相比,非白人种族。当将CVD-PRS添加到动脉粥样硬化性心血管疾病合并队列方程(ASCVD-PCE)或SCORE2临床评分中时,发现相似。
    结论:在临床环境中,将遗传信息添加到临床风险评估中,显著提高了对继续发生重大CVD事件的高危个体的识别,尤其是年轻人。这些发现为在卫生系统中实施CVD-PRS的潜在价值提供了重要的现实证据。
    OBJECTIVE: A cardiovascular disease polygenic risk score (CVD-PRS) can stratify individuals into different categories of cardiovascular risk, but whether the addition of a CVD-PRS to clinical risk scores improves the identification of individuals at increased risk in a real-world clinical setting is unknown.
    METHODS: The Genetics and the Vascular Health Check Study (GENVASC) was embedded within the UK National Health Service Health Check (NHSHC) programme which invites individuals between 40-74 years of age without known CVD to attend an assessment in a UK general practice where CVD risk factors are measured and a CVD risk score (QRISK2) is calculated. Between 2012-2020, 44,141 individuals (55.7% females, 15.8% non-white) who attended an NHSHC in 147 participating practices across two counties in England were recruited and followed. When 195 individuals (cases) had suffered a major CVD event (CVD death, myocardial infarction or acute coronary syndrome, coronary revascularisation, stroke), 396 propensity-matched controls with a similar risk profile were identified, and a nested case-control genetic study undertaken to see if the addition of a CVD-PRS to QRISK2 in the form of an integrated risk tool (IRT) combined with QRISK2 would have identified more individuals at the time of their NHSHC as at high risk (QRISK2 10-year CVD risk of ≥10%), compared with QRISK2 alone.
    RESULTS: The distribution of the standardised CVD-PRS was significantly different in cases compared with controls (cases mean score .32; controls, -.18, P = 8.28×10-9). QRISK2 identified 61.5% (95% confidence interval [CI]: 54.3%-68.4%) of individuals who subsequently developed a major CVD event as being at high risk at their NHSHC, while the combination of QRISK2 and IRT identified 68.7% (95% CI: 61.7%-75.2%), a relative increase of 11.7% (P = 1×10-4). The odds ratio (OR) of being up-classified was 2.41 (95% CI: 1.03-5.64, P = .031) for cases compared with controls. In individuals aged 40-54 years, QRISK2 identified 26.0% (95% CI: 16.5%-37.6%) of those who developed a major CVD event, while the combination of QRISK2 and IRT identified 38.4% (95% CI: 27.2%-50.5%), indicating a stronger relative increase of 47.7% in the younger age group (P = .001). The combination of QRISK2 and IRT increased the proportion of additional cases identified similarly in women as in men, and in non-white ethnicities compared with white ethnicity. The findings were similar when the CVD-PRS was added to the atherosclerotic cardiovascular disease pooled cohort equations (ASCVD-PCE) or SCORE2 clinical scores.
    CONCLUSIONS: In a clinical setting, the addition of genetic information to clinical risk assessment significantly improved the identification of individuals who went on to have a major CVD event as being at high risk, especially among younger individuals. The findings provide important real-world evidence of the potential value of implementing a CVD-PRS into health systems.
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  • 文章类型: Journal Article
    背景:减肥手术是目前治疗重度肥胖最有效的长期治疗方法。然而,在手术结局中观察到的个体差异表明几个因素的调节作用,包括个体遗传背景。我们的目标是研究BMI的遗传结构对减肥手术后体重减轻结果变异性的贡献。
    方法:对106例重度肥胖患者行Roux-en-Y胃旁路术或袖状胃切除术,随访5年。在术后期间评估体重指数(BMIchange)和总体重减轻百分比(%TWL)的变化。为每个参与者计算包括50个遗传变异的多基因风险评分,以根据先前的GWAS确定他们的高BMI个体遗传风险。使用广义估计方程模型来研究个体多基因得分的作用,以及其他因素,术后长期BMI变化和%TWL。
    结果:我们发现多基因评分对%TWL和BMI改变有影响,其中得分较低的受试者在手术后的结局优于得分较高的受试者。此外,当仅分析接受Roux-en-Y胃旁路术的患者时,这些结果重复显示,多基因评分较低的患者术后体重减轻更大.
    结论:这些结果表明,用多基因风险评分评估遗传背景,以及其他个人因素,如性别,年龄,和术前BMI,对减肥手术结局有影响,可作为提前评估手术结局的有用工具.
    BACKGROUND: Bariatric surgery (BS) is currently the most effective long-term treatment of severe obesity. However, the interindividual variability observed in surgical outcomes suggests a moderating effect of several factors, including individual genetic background. This study aimed to investigate the contribution of the genetic architecture of body mass index (BMI) to the variability in weight loss outcomes after BS.
    METHODS: A total of 106 patients with severe obesity who underwent Roux-en-Y gastric bypass (RYGB) or sleeve gastrectomy were followed up for 5 years. Changes in BMI (BMIchange) and percentage of total weight loss (%TWL) were evaluated during the postoperative period. Polygenic risk scores (PRSs), including 50 genetic variants, were calculated for each participant to determine their genetic risk of high BMI based on a previous genome-wide association study. Generalized estimating equation models were used to study the role of the individual\'s polygenic score and other factors on BMIchange and %TWL in the long term after surgery.
    RESULTS: This study found an effect of the polygenic score on %TWL and BMIchange, in which patients with lower scores had better outcomes after surgery than those with higher scores. Furthermore, when analyzing only patients who underwent RYGB, the results were replicated, showing greater weight loss after surgery for patients with lower polygenic scores.
    CONCLUSIONS: Our results indicate that genetic background assessed with PRSs, along with other individual factors, such as biological sex, age, and preoperative BMI, has an effect on BS outcomes and could represent a useful tool for estimating surgical outcomes in advance.
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