Pathomics

Pathomics
  • 文章类型: Journal Article
    背景:计算病理学是一个新的跨学科领域,它将传统病理学与数字成像和机器学习等现代技术相结合,以更好地理解诊断,预后,和许多疾病的自然史。
    目的:概述数字和计算病理学及其在肾细胞癌(RCC)中的当前和潜在应用。
    方法:使用PubMed对英语文献进行了系统回顾,WebofScience,和Scopus数据库于2022年12月根据系统审查和荟萃分析指南的首选报告项目(PROSPEROID:CRD42023389282)。根据预测模型研究偏差风险评估工具评估偏差风险。
    结果:总计,20篇文章被纳入审查。所有的研究都采用了回顾性设计,所有数字病理学技术都是回顾性实施的。这些研究根据其主要目标进行分类:检测,肿瘤特征,和患者的结果。关于向临床实践的过渡,几项研究显示出有希望的潜力。然而,没有人对临床效用和实施情况进行全面评估.值得注意的是,用于模型构建的策略和报告的绩效指标都存在很大的异质性.
    结论:这篇综述突出了数字和计算病理学在检测方面的巨大潜力,分类,和评估RCC的肿瘤学结果。这一领域的初步工作取得了可喜的成果。然而,这些模型尚未达到可以整合到常规临床实践中的阶段.
    结果:计算病理学将传统病理学与数字成像和人工智能等技术相结合,以改善疾病诊断并确定预后因素和新的生物标志物。探索其在肾癌中的潜力的研究数量正在迅速增加。然而,尽管研究活动激增,计算病理学尚未准备好广泛的常规使用。
    BACKGROUND: Computational pathology is a new interdisciplinary field that combines traditional pathology with modern technologies such as digital imaging and machine learning to better understand the diagnosis, prognosis, and natural history of many diseases.
    OBJECTIVE: To provide an overview of digital and computational pathology and its current and potential applications in renal cell carcinoma (RCC).
    METHODS: A systematic review of the English-language literature was conducted using the PubMed, Web of Science, and Scopus databases in December 2022 according to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines (PROSPERO ID: CRD42023389282). Risk of bias was assessed according to the Prediction Model Study Risk of Bias Assessment Tool.
    RESULTS: In total, 20 articles were included in the review. All the studies used a retrospective design, and all digital pathology techniques were implemented retrospectively. The studies were classified according to their primary objective: detection, tumor characterization, and patient outcome. Regarding the transition to clinical practice, several studies showed promising potential. However, none presented a comprehensive assessment of clinical utility and implementation. Notably, there was substantial heterogeneity for both the strategies used for model building and the performance metrics reported.
    CONCLUSIONS: This review highlights the vast potential of digital and computational pathology for the detection, classification, and assessment of oncological outcomes in RCC. Preliminary work in this field has yielded promising results. However, these models have not yet reached a stage where they can be integrated into routine clinical practice.
    RESULTS: Computational pathology combines traditional pathology and technologies such as digital imaging and artificial intelligence to improve diagnosis of disease and identify prognostic factors and new biomarkers. The number of studies exploring its potential in kidney cancer is rapidly increasing. However, despite the surge in research activity, computational pathology is not yet ready for widespread routine use.
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  • 文章类型: Journal Article
    在二十世纪末,开发了一种新技术,可以在客观载玻片上扫描整个组织切片。最初被称为虚拟显微镜,这种技术现在被称为全幻灯片成像(WSI)。WSI对阅读提出了新的挑战,可视化,storage,和分析。出于这个原因,已经开发了几种技术来促进这些图像的处理。在本文中,我们分析了数字病理学领域使用最广泛的技术,从阅读这些图像的专门图书馆到允许阅读的完整平台,可视化,和分析。我们的目标是为读者提供,无论是病理学家还是计算科学家,具有选择用于新研究的技术的知识,发展,或研究。
    At the end of the twentieth century, a new technology was developed that allowed an entire tissue section to be scanned on an objective slide. Originally called virtual microscopy, this technology is now known as Whole Slide Imaging (WSI). WSI presents new challenges for reading, visualization, storage, and analysis. For this reason, several technologies have been developed to facilitate the handling of these images. In this paper, we analyze the most widely used technologies in the field of digital pathology, ranging from specialized libraries for the reading of these images to complete platforms that allow reading, visualization, and analysis. Our aim is to provide the reader, whether a pathologist or a computational scientist, with the knowledge to choose the technologies to use for new studies, development, or research.
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  • 文章类型: Journal Article
    In the last decade, the focus of computational pathology research community has shifted from replicating the pathological examination for diagnosis done by pathologists to unlocking and discovering \"sub-visual\" prognostic image cues from the histopathological image. While we are getting more knowledge and experience in digital pathology, the emerging goal is to integrate other-omics or modalities that will contribute for building a better prognostic assay. In this paper, we provide a brief review of representative works that focus on integrating pathomics with radiomics and genomics for cancer prognosis. It includes: correlation of pathomics and genomics; fusion of pathomics and genomics; fusion of pathomics and radiomics. We also present challenges, potential opportunities, and avenues for future work.
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