Open source

开源
  • 文章类型: Journal Article
    背景:低收入和中低收入国家占全球流行病和慢性病的比例更高。在大多数低收入和中低收入国家,获得医疗保健的机会有限。开源电子健康记录(EHR)的实施可以被理解为低收入和中低收入国家的强大推动力,因为它可以改变医疗技术的交付方式。开源EHR可以通过改善收集来增强低收入和中低收入国家的医疗保健服务,管理,以及为医疗保健提供信息所需的健康数据的分析,政策,和规划。虽然开源EHR系统具有成本效益和适应性,它们在低收入和中低收入国家并没有迅速扩散。实施障碍缓慢采用,现有的研究主要集中在阻止成功实施的技术问题上。
    目的:本跨学科范围界定综述旨在概述影响低收入和中低收入国家适应和实施开源EHR系统的背景障碍,并确定未来研究的领域。
    方法:我们遵循系统的方法框架进行了范围界定文献综述。总共从3个学科中选择了7个数据库:医学和健康科学,计算,和社会科学。根据PRISMA-ScR(系统审查的首选报告项目和范围审查的荟萃分析扩展)清单报告研究结果。使用混合方法评估工具和关键评估技能计划清单来评估相关研究的质量。对数据进行了整理和总结,结果被定性报道,采用叙事综合方法。
    结果:本综述包括13项研究,这些研究从3个相互关联的角度考察了低收入和中低收入国家开源EHRs的适应和实施:社会环境,技术,和组织障碍。这些研究确定了关键问题,如资金有限,可持续性组织和管理挑战,基础设施,数据隐私和保护,和所有权。数据保护,保密性,所有权,道德成为重要问题,经常被技术过程所掩盖。
    结论:虽然开源EHR有可能在低收入和中低收入国家环境中提高医疗保健服务,实施困难重重。这一范围审查表明,根据所采用的实施观点,不同的实施障碍出现在人们的视野中。对技术的主要关注分散了影响开源EHR扩散的社会环境和组织障碍。地方执行组织在解决低收入和中低收入国家的执行障碍方面的作用仍不清楚。需要全面了解实施者的实施过程经验。这可以帮助表征和解决实施问题,包括与道德和数据保护管理有关的内容。然而,本范围审查为全球卫生信息学学科提供了有意义的贡献.
    BACKGROUND: Low- and lower-middle-income countries account for a higher percentage of global epidemics and chronic diseases. In most low- and lower-middle-income countries, there is limited access to health care. The implementation of open-source electronic health records (EHRs) can be understood as a powerful enabler for low- and lower-middle-income countries because it can transform the way health care technology is delivered. Open-source EHRs can enhance health care delivery in low- and lower-middle-income countries by improving the collection, management, and analysis of health data needed to inform health care delivery, policy, and planning. While open-source EHR systems are cost-effective and adaptable, they have not proliferated rapidly in low- and lower-middle-income countries. Implementation barriers slow adoption, with existing research focusing predominantly on technical issues preventing successful implementation.
    OBJECTIVE: This interdisciplinary scoping review aims to provide an overview of contextual barriers affecting the adaptation and implementation of open-source EHR systems in low- and lower-middle-income countries and to identify areas for future research.
    METHODS: We conducted a scoping literature review following a systematic methodological framework. A total of 7 databases were selected from 3 disciplines: medicine and health sciences, computing, and social sciences. The findings were reported in accordance with the PRISMA-ScR (Preferred Reporting Items for Systematic Reviews and Meta-Analyses extension for Scoping Reviews) checklist. The Mixed Methods Appraisal Tool and the Critical Appraisal Skills Programme checklists were used to assess the quality of relevant studies. Data were collated and summarized, and results were reported qualitatively, adopting a narrative synthesis approach.
    RESULTS: This review included 13 studies that examined open-source EHRs\' adaptation and implementation in low- and lower-middle-income countries from 3 interrelated perspectives: socioenvironmental, technological, and organizational barriers. The studies identified key issues such as limited funding, sustainability, organizational and management challenges, infrastructure, data privacy and protection, and ownership. Data protection, confidentiality, ownership, and ethics emerged as important issues, often overshadowed by technical processes.
    CONCLUSIONS: While open-source EHRs have the potential to enhance health care delivery in low- and lower-middle-income-country settings, implementation is fraught with difficulty. This scoping review shows that depending on the adopted perspective to implementation, different implementation barriers come into view. A dominant focus on technology distracts from socioenvironmental and organizational barriers impacting the proliferation of open-source EHRs. The role of local implementing organizations in addressing implementation barriers in low- and lower-middle-income countries remains unclear. A holistic understanding of implementers\' experiences of implementation processes is needed. This could help characterize and solve implementation problems, including those related to ethics and the management of data protection. Nevertheless, this scoping review provides a meaningful contribution to the global health informatics discipline.
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  • 文章类型: Journal Article
    深度学习是几乎所有医学领域最重要的技术之一。尤其是在地区,与医学影像有关的它起着很大的作用。然而,在介入放射治疗(近距离放射治疗)中,深度学习仍处于早期阶段。在这次审查中,首先,我们调查并审查了深度学习在介入放射治疗的所有过程和直接相关领域中的作用。此外,我们总结了最新发展。为了更好地理解,我们提供了解决常见深度学习问题的关键术语和方法的解释。要重现深度学习算法的结果,必须同时提供源代码和训练数据。因此,这项工作的第二个重点是分析开源的可用性,开放数据和开放模型。在我们的分析中,我们能够证明深度学习已经在介入放射治疗的某些领域发挥了重要作用,但在其他人中仍然很少出现。然而,它的影响随着时间的推移而增加,部分是自我推进的,但也受到密切相关的领域的影响。开源,数据和模型的数量正在增长,但在不同的研究小组中仍然很少且分布不均。不愿发布代码,数据和模型限制了可重复性,并限制了对单一机构数据集的评估。我们分析的结论是,深度学习可以积极改变介入放射治疗的工作流程,但在可重复结果和标准化评估方法方面仍有改进的空间。
    Deep learning advanced to one of the most important technologies in almost all medical fields. Especially in areas, related to medical imaging it plays a big role. However, in interventional radiotherapy (brachytherapy) deep learning is still in an early phase. In this review, first, we investigated and scrutinised the role of deep learning in all processes of interventional radiotherapy and directly related fields. Additionally, we summarised the most recent developments. For better understanding, we provide explanations of key terms and approaches to solving common deep learning problems. To reproduce results of deep learning algorithms both source code and training data must be available. Therefore, a second focus of this work is on the analysis of the availability of open source, open data and open models. In our analysis, we were able to show that deep learning plays already a major role in some areas of interventional radiotherapy, but is still hardly present in others. Nevertheless, its impact is increasing with the years, partly self-propelled but also influenced by closely related fields. Open source, data and models are growing in number but are still scarce and unevenly distributed among different research groups. The reluctance in publishing code, data and models limits reproducibility and restricts evaluation to mono-institutional datasets. The conclusion of our analysis is that deep learning can positively change the workflow of interventional radiotherapy but there is still room for improvements when it comes to reproducible results and standardised evaluation methods.
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  • 文章类型: Journal Article
    BACKGROUND: The EU promotes \'Open Science\' as a public good. Complementary to its implementation is Citizen Science, which redefines the relationship between the scientific community, civic society and the individual. Open Science and Citizen Science poses challenges for the substance use and addictions research community but may provide positive opportunities for future European addiction research. This paper explores both current barriers and potential facilitators for the implementation of Open Science and Citizen Science in substance use and addictions research.
    METHODS: A scoping review was used to examine barriers and facilitators identified in the substance use and addiction research literature for the adoption of Open Science and Citizen Science.
    RESULTS: \'Technical\' facilitators included the pre-registration of study protocols; publication of open-source datasets; open peer review and online tools. \'Motivational\' facilitators included enhanced reputation; embracing co-creation; engaged citizenship and gamification. \'Economic\' facilitators included the use of free tools and balanced remuneration of crowdworkers. \'Political\' facilitators included better informed debates through the \'triple helix\' approach and trust-generating transparency. \'Legal\' facilitators included epidemiologically informed law enforcement; better policy surveillance and the validation of other datasets. \'Ethical\' facilitators included the \'democratisation of science\' and opportunities to explore new concepts of ethics in addiction research.
    CONCLUSIONS: Open Science and Citizen Science in substance use and addictions research may provide a range of benefits in relation to the democratisation of science; transparency; efficiency and the reliability/validity of data. However, its implementation raises a range of research integrity and ethical issues that need be considered. These include issues related to participant recruitment; privacy; confidentiality; security; cost and industry involvement. Progressive journal policies to support Open Science practices; a shift in researcher norms; the use of free tools and the greater availability of methodological and ethical standards are likely to increase adoption in the field.
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  • 文章类型: Journal Article
    背景:这项研究调查了在英国使用自己动手的人工胰腺系统(DIYAPS),以及与之相关的自我报告结果是否受到用户人口统计的影响。
    方法:进行了一项在线调查,以评估用户人口统计数据和自我报告的时间范围(TIR)结果。进行统计分析以审查结果,并检查TIR随年龄的变化是否存在重大差异,性别和糖尿病的持续时间。
    结果:在广泛的用户年龄范围内对调查的253个有效答复中,74.4%与成年用户有关,25.6%与16岁以下儿童有关。大多数(65.6%)使用AndroidAPS,但16岁以下儿童使用Loop的比例(43.1%)高于成年人(25.9%)。相应地,使用OmnipodEros的16岁以下儿童(40.0%)比成年人(24.3%)多。据报道,所有参与者的时间范围增加了17.3%(±13.7%),年龄组之间没有观察到显著差异,性别或糖尿病病程组(p>0.05)。
    结论:结果表明,男女都在使用这些系统,并且用户涵盖了广泛的年龄和糖尿病持续时间。他们还表明,自我报告的DIYAPS医疗保健结果的改善可能并非特定于任何特定年龄,性别或糖尿病的持续时间,并且结果可以通过人口统计提供对算法适用性的额外见解。这项研究还可以告知医疗保健专业人员有关DIYAPS解决方案的使用和有效性。
    BACKGROUND: This study investigates the use of do-it-yourself artificial pancreas systems (DIYAPS) in the UK, and whether self-reported outcomes associated with them are affected by the demographics of the user.
    METHODS: An online survey was conducted to assess user demographic data and self-reported time-in-range (TIR) outcomes. Statistical analysis was undertaken to review the results and check whether there were major differences in change in TIR across age, gender and duration of diabetes.
    RESULTS: Of 253 valid responses to the survey across a wide age range of users, 74.4% related to adult users and 25.6% related to under-16s. The majority (65.6%) used AndroidAPS, but there was greater use of Loop (43.1%) amongst under-16s than amongst adults (25.9%). Correspondingly, more under-16s (40.0%) than adults (24.3%) used Omnipod Eros. A 17.3% (± 13.7%) increase in time in range was reported across all participants, with no significant differences observed between age groups, genders or diabetes duration groups (p > 0.05).
    CONCLUSIONS: The results show that these systems are being used by both genders, and that users cover a wide range of ages and diabetes durations. They also show that improvements in self-reported DIYAPS healthcare outcomes may not be specific to any particular age, gender or duration of diabetes, and the results may provide additional insights into the applicability of the algorithms by demographic. This study may also inform healthcare professionals about the use and effectiveness of DIYAPS solutions.
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  • 文章类型: Journal Article
    Both the free and open source software (FOSS) as well as the distributed digital manufacturing of free and open source hardware (FOSH) has shown particular promise among scientists for developing custom scientific tools. Early research found substantial economic savings for these technologies, but as the open source design paradigm has grown by orders of magnitude it is possible that the savings observed in the early work was isolated to special cases. Today there are examples of open source technology for science in the vast majority of disciplines and several resources dedicated specifically to publishing them. Do the tremendous economic savings observed earlier hold today? To answer that question, this study evaluates free and open source technologies in the two repositories compared to proprietary functionally-equivalent tools as a function of their use of Arduino-based electronics, RepRap-class 3-D printing, as well as the combination of the two. The results of the review find overwhelming evidence for a wide range of scientific tools, that open source technologies provide economic savings of 87% compared to equivalent or lesser proprietary tools. These economic savings increased slightly to 89% for those that used Arduino technology and even more to 92% for those that used RepRap-class 3-D printing. Combining both Arduino and 3-D printing the savings averaged 94% for free and open source tools over commercial equivalents. The results provide strong evidence for financial support of open source hardware and software development for the sciences. Given the overwhelming economic advantages of free and open source technologies, it appears financially responsible to divert funding of proprietary scientific tools and their development in favor of FOSH. Policies were outlined that provide nations with a template for strategically harvesting the opportunities provided by the free and open source paradigm.
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  • 文章类型: Journal Article
    2019年冠状病毒病(COVID-19)可能会在地区层面压倒我们的医疗基础设施,导致由于关键设备短缺而导致死亡率飙升,比如呼吸机.幸运的是,随着RepRap-class3-D打印机和开源微控制器等小规模制造技术的最新发展和广泛部署,大规模分布式制造呼吸机有可能克服医疗供应短缺。在这项研究中,在提供了呼吸机的背景之后,对学术文献进行回顾,以找到现有的和已经公开发表的,通风系统的设计。对这些文章进行分析,以确定设计是否在精神(许可)和实际细节上都是开源的(例如拥有可访问的设计源文件,材料清单,装配说明,接线图,固件和软件以及操作和校准说明)。接下来,回顾了现有的互联网和灰色文献,用于开源呼吸机项目和设计。这项审查的结果发现,经过测试和同行评审的系统缺乏完整的文档,并且记录的开放系统要么处于设计的早期阶段(有时甚至没有原型),并且基本上只进行了基本测试(如果有的话)。随着持续大流行的更大动机,据推测,这些项目将获得更多的关注和资源,以取得重大进展,以实现一个功能性和易于复制的系统。将开源呼吸机提升到被认为是科学级设备的水平需要大量的未来工作,甚至需要进一步的工作来达到医疗级硬件。未来需要开展工作,通过制定政策来实现这一方法的潜力,更新法规,并确保为当前COVID19大流行以及未来大流行和低资源环境中的日常使用开发和测试开源呼吸机的供资机制。
    Coronavirus Disease 2019 (COVID-19) threatens to overwhelm our medical infrastructure at the regional level causing spikes in mortality rates because of shortages of critical equipment, like ventilators. Fortunately, with the recent development and widespread deployment of small-scale manufacturing technologies like RepRap-class 3-D printers and open source microcontrollers, mass distributed manufacturing of ventilators has the potential to overcome medical supply shortages. In this study, after providing a background on ventilators, the academic literature is reviewed to find the existing and already openly-published, vetted designs for ventilators systems. These articles are analyzed to determine if the designs are open source both in spirit (license) as well as practical details (e.g. possessing accessible design source files, bill of materials, assembly instructions, wiring diagrams, firmware and software as well as operation and calibration instructions). Next, the existing Internet and gray literature are reviewed for open source ventilator projects and designs. The results of this review found that the tested and peer-reviewed systems lacked complete documentation and the open systems that were documented were either at the very early stages of design (sometimes without even a prototype) and were essentially only basically tested (if at all). With the considerably larger motivation of an ongoing pandemic, it is assumed these projects will garner greater attention and resources to make significant progress to reach a functional and easily-replicated system. There is a large amount of future work needed to move open source ventilators up to the level considered scientific-grade equipment, and even further work needed to reach medical-grade hardware. Future work is needed to achieve the potential of this approach by developing policies, updating regulations, and securing funding mechanisms for the development and testing of open source ventilators for both the current COVID19 pandemic as well as for future pandemics and for everyday use in low-resource settings.
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  • 文章类型: Journal Article
    计算机断层扫描(CT)在医学诊断中得到了广泛的应用,无损评估,国土安全,以及其他科学和工程应用。图像重建是CT成像的核心技术之一。在这篇综述论文中,我们系统地回顾了目前公开可用的CT图像重建开源工具包在其环境方面,对象模型,成像,几何形状和算法。除了分析和迭代算法,深度学习重建网络和开放代码也被认为是第三类重建算法。对公开可用的软件平台的系统总结将有助于促进CT的研究和开发。
    Computed tomography (CT) has been widely applied in medical diagnosis, nondestructive evaluation, homeland security, and other science and engineering applications. Image reconstruction is one of the core CT imaging technologies. In this review paper, we systematically reviewed the currently publicly available CT image reconstruction open source toolkits in the aspects of their environments, object models, imaging geometries, and algorithms. In addition to analytic and iterative algorithms, deep learning reconstruction networks and open codes are also reviewed as the third category of reconstruction algorithms. This systematic summary of the publicly available software platforms will help facilitate CT research and development.
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  • 文章类型: Journal Article
    BACKGROUND: Due to the many advantages of open source software (OSS), including reduced cost of licensing, more flexibility in terms of customisation and redistribution, better quality and no vendor lock-in, OSS in healthcare is increasingly gaining importance. Various open source health information technologies (OS-HITs) are continuously being designed and developed for different areas of healthcare to increase organisational efficiencies and quality of care at minimum costs. The objective of this scoping review is to identify the kinds of existing OS-HITs, their characteristics (e.g. functions) and capabilities (e.g. advantages/disadvantages) for various healthcare stakeholders (physicians and patients) and healthcare sectors (e.g. clinical, administrative).
    METHODS: We will conduct a scoping review to identify the range of available OS-HITs in international literature from 1980 to September 2018. Searches will be conducted in six major international databases, namely: Cumulative Index to Nursing and Allied Health Literature Plus, Excerpta Medica Database, Global Health, Library Information Science and Technology Abstracts, Medline and Web of Science to identify relevant published research. We will also search the Google search engine and Google Scholar for on-going and unpublished work and the grey literature. Searches will be peer-reviewed by two independent reviewers and will not be limited by methodology or language. Next, selected references will be tabulated for study characteristics by author affiliation, country of origin, the name of OS-HIT, healthcare area/sector, system requirements, stakeholders, complete solution and web link. Furthermore, functions, benefits/advantages, disadvantages and outcomes (e.g. usability) of OS-HITs will be extracted. Narrative and interpretative synthesis of data will be undertaken.
    RESULTS: We will report our findings in a peer-reviewed journal.
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  • 文章类型: Journal Article
    Academics have a duty towards peers and scholars alike to engage in research work and to publish their findings. This also assists in establishing personal academic success as well as the attainment of research grants. In the past, authors used to publish their research articles for free but access to these articles was restricted to subscription users only. Recently, open access publishing has gained momentum, whereby such articles are made freely accessible online. However open access publishing comes with a price tag for the author through article processing charges. Open access may also question a journal\'s credibility within the academic world if improperly implemented. This is particularly so following the unsolicited bombardment of researchers\' email accounts with invitations for submissions to predatory open access journals. For these reasons, authors needs to rigorously weigh the pros and cons of whether to choose a subscription based or an open access journal for publication.
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  • 文章类型: Journal Article
    BACKGROUND: Despite the great impact of information and communication technologies on clinical practice and on the quality of health services, this trend has been almost exclusive to developed countries, whereas countries with poor resources suffer from many economic and social issues that have hindered the real benefits of electronic health (eHealth) tools. As a component of eHealth systems, electronic health records (EHRs) play a fundamental role in patient management and effective medical care services. Thus, the adoption of EHRs in regions with a lack of infrastructure, untrained staff, and ill-equipped health care providers is an important task. However, the main barrier to adopting EHR software in low- and middle-income countries is the cost of its purchase and maintenance, which highlights the open-source approach as a good solution for these underserved areas.
    OBJECTIVE: The aim of this study was to conduct a systematic review of open-source EHR systems based on the requirements and limitations of low-resource settings.
    METHODS: First, we reviewed existing literature on the comparison of available open-source solutions. In close collaboration with the University of Gondar Hospital, Ethiopia, we identified common limitations in poor resource environments and also the main requirements that EHRs should support. Then, we extensively evaluated the current open-source EHR solutions, discussing their strengths and weaknesses, and their appropriateness to fulfill a predefined set of features relevant for low-resource settings.
    RESULTS: The evaluation methodology allowed assessment of several key aspects of available solutions that are as follows: (1) integrated applications, (2) configurable reports, (3) custom reports, (4) custom forms, (5) interoperability, (6) coding systems, (7) authentication methods, (8) patient portal, (9) access control model, (10) cryptographic features, (11) flexible data model, (12) offline support, (13) native client, (14) Web client,(15) other clients, (16) code-based language, (17) development activity, (18) modularity, (19) user interface, (20) community support, and (21) customization. The quality of each feature is discussed for each of the evaluated solutions and a final comparison is presented.
    CONCLUSIONS: There is a clear demand for open-source, reliable, and flexible EHR systems in low-resource settings. In this study, we have evaluated and compared five open-source EHR systems following a multidimensional methodology that can provide informed recommendations to other implementers, developers, and health care professionals. We hope that the results of this comparison can guide decision making when needing to adopt, install, and maintain an open-source EHR solution in low-resource settings.
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