Nucleocapsid

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  • 文章类型: Systematic Review
    目标:全球,已经报告了超过7.72亿例COVID-19病例。在病例编号中具有相应尖峰的感兴趣的新变体继续被鉴定。脆弱的病人,包括老年人或患有严重合并症的患者,继续处于危险之中。关于抗SARS-CoV-2-抗体和COVID-19的大量证据已经积累,但抗体测量的有用性仍不清楚。本系统综述旨在评估抗SARS-CoV-2抗体的预后价值及其对指导加强疫苗接种的有用性。
    方法:包括2020年1月至2023年10月发表的英文研究。依赖于多参数模型或包含少于100名参与者的研究被排除在外。PubMed和通过WHOCOVID-19研究数据库,检索Embase和Medline数据库。研究选择和质量评估由两名研究人员独立进行。
    结果:在筛选1,160项研究后,包括超过3000万个体的33项研究。抗SARS-CoV-2抗体与降低SARS-CoV-2感染的风险和更好的结果密切相关。包括死亡率。感染风险和COVID-19严重程度随着抗体水平的增加而降低。
    结论:抗SARS-CoV-2-抗体有助于早期识别高危患者并及时调整治疗方案。可以应用保护阈值来建议加强疫苗接种,但需要在单独的队列中进行验证。
    OBJECTIVE: Globally, over 772 million cases of COVID-19 have been reported. New variants of interest with corresponding spikes in case numbers continue to be identified. Vulnerable patients, including older adults or patients with severe comorbidities, continue to be at risk. A large body of evidence has been accumulated regarding anti-SARS-CoV-2-antibodies and COVID-19 but the usefulness of antibody measurements remains unclear. This systematic review aims to assess the prognostic value of anti-SARS-CoV-2-antibodies and their usefulness for guiding booster vaccinations.
    METHODS: Studies in English and published between January 2020 and October 2023 were included. Studies that relied on multiparameter-models or comprised fewer than 100 participants were excluded. PubMed and via the WHO COVID-19 research database, Embase and Medline databases were searched. Study selection and quality assessment was conducted independently by two researchers.
    RESULTS: After screening 1,160 studies, 33 studies comprising >30 million individuals were included. Anti-SARS-CoV-2-antibodies were strongly associated with reduced risk of SARS-CoV-2-infection and better outcomes, including mortality. Risk of infection and COVID-19 severity decreased with increasing antibody levels.
    CONCLUSIONS: Anti-SARS-CoV-2-antibodies are useful for early identification of high-risk patients and timely adjustment of therapy. Protective thresholds may be applied to advise booster vaccinations but verification in separate cohorts is required.
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  • 文章类型: Journal Article
    The Gag polyprotein is implied in the budding as well as the establishment of the supramolecular architecture of infectious retroviral particles. It is also involved in the early phases of the replication of retroviruses by protecting and transporting the viral genome towards the nucleus of the infected cell until its integration in the host genome. Therefore, understanding the structure-function relationships of the Gag subunits is crucial as each of them can represent a therapeutic target. Though the field has been explored for some time in the area of Human Immunodeficiency Virus (HIV), it is only in the last decade that structural data on Feline Immunodeficiency Virus (FIV) Gag subunits have emerged. As FIV is an important veterinary issue, both in domestic cats and endangered feline species, such data are of prime importance for the development of anti-FIV molecules targeting Gag. This review will focus on the recent advances and perspectives on the structure-function relationships of each subunit of the FIV Gag polyprotein.
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  • 文章类型: Journal Article
    这项工作建立在破纪录的速度和慷慨的立即释放严重急性呼吸道综合症冠状病毒2(SARS-CoV-2)蛋白质和复合物的新实验三维结构的基础上,这对下游疫苗和药物开发至关重要。我们已经对这些结构进行了调查,以发现偶然的错误,这些错误可能对这些重要用途具有重要意义,并且我们能够提供明显的更高精度的校正。这个过程依赖于新的验证和校正方法,如CaBLAM和ISOLDE,还没有常规使用。我们在七个早期的SARS-CoV-2结构中发现了如此重要且可纠正的问题。其中两个结构很快被新的更高分辨率数据取代,确认我们提出的变更。对于其他五个,我们通过电子邮件向存款人提交了一份记录和插图的报告,并鼓励他们自己进行模型更正,并在全球蛋白质数据库中使用新选项,以便存款人在不更改蛋白质数据库代码的情况下重新调整其坐标。这快速,轻松地使得更好的精度坐标提供给任何人谁检查或下载他们的结构,甚至在正式出版之前。这些变化涉及序列错位,结合抑制剂附近不正确的RNA构象,不正确的金属配体,和顺式-反式或肽翻转,阻止在相互作用部位的良好接触。这些改进已经传播到后来完成的几乎所有相关结构中。这个过程构成了一种高度严格的同行评审的新形式,这实际上比标准出版物审查更快,更严格,因为它可以访问坐标和地图;期刊同行评审也将通过这种访问得到加强。
    This work builds upon the record-breaking speed and generous immediate release of new experimental three-dimensional structures of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) proteins and complexes, which are crucial to downstream vaccine and drug development. We have surveyed those structures to catch the occasional errors that could be significant for those important uses and for which we were able to provide demonstrably higher-accuracy corrections. This process relied on new validation and correction methods such as CaBLAM and ISOLDE, which are not yet in routine use. We found such important and correctable problems in seven early SARS-CoV-2 structures. Two of the structures were soon superseded by new higher-resolution data, confirming our proposed changes. For the other five, we emailed the depositors a documented and illustrated report and encouraged them to make the model corrections themselves and use the new option at the worldwide Protein Data Bank for depositors to re-version their coordinates without changing the Protein Data Bank code. This quickly and easily makes the better-accuracy coordinates available to anyone who examines or downloads their structure, even before formal publication. The changes have involved sequence misalignments, incorrect RNA conformations near a bound inhibitor, incorrect metal ligands, and cis-trans or peptide flips that prevent good contact at interaction sites. These improvements have propagated into nearly all related structures done afterward. This process constitutes a new form of highly rigorous peer review, which is actually faster and more strict than standard publication review because it has access to coordinates and maps; journal peer review would also be strengthened by such access.
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  • 文章类型: Case Reports
    A 39-year-old, homosexual, Caucasian man with a 9-month history of acquired immunodeficiency syndrome by reduced CD4 lymphocyte count alone was found to have extensive, asymptomatic, nonremovable, corrugated, white patches on the lateral borders and ventral aspects of the tongue typical of oral hairy leukoplakia (OHL). Histologically, irregular hyperparakeratosis, acanthosis, and clusters of ballooned keratinocytes in the stratum spinosum were present in the biopsied lateral tongue. Some of the superficial ballooned keratinocytes had peripherally beaded nuclei, whereas others had ground glass intranuclear inclusions. Ultrastructurally, the ballooned keratinocytes had three important findings of diagnostic significance. First, frequent herpesvirus nucleocapsids were largely confined to superficial ballooned keratinocytes having marginated and condensed chromatin. In searching for herpesvirus nucleocapsids, the marginated and condensed chromatin was an invaluable marker for cells harboring the virions. Second, the marginated and condensed chromatin frequently had a distinctive punched-out or cribriform appearance. Third, the ground glass intranuclear inclusion bodies consisted of central, medium electron-dense, finely granular material containing frequent herpesvirus nucleocapsids and partially surrounded or capped by prominent, clumped chromatin. The patient died with progressive multifocal leukoencephalopathy 24 months after OHL was diagnosed.
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