Monte Carlo method

蒙特卡罗方法
  • 文章类型: Journal Article
    在本研究中,九十五种卤化二恶英和相关化学品(二苯并对二恶英,二苯并呋喃,联苯,和萘)与终点pEC50一起使用CORAL软件的内置蒙特卡罗算法开发了十二个定量结构毒性关系(QSTR)模型。使用SMILES和HSG(氢抑制图)的组合使用相关权重的混合最佳描述符(DCW)来生成QSTR模型。三个目标函数,即TF1(WIIC=WCII=0),使用TF2(WIIC=0.3&WCII=0)和TF3(WIIC=0.0&WCII=0.3)来开发稳健的QSTR模型,并将每个目标函数的统计结果相互比较。发现相关强度指数(CII)是QSTR模型预测潜力的可靠基准。发现由TF3计算的分裂1的验证集的测定系数的数值最高(Rvalid2=0.8438)。还根据pEC50的增加/减少的促进剂鉴定了造成二恶英和相关化学物质毒性的片段。选择三个随机分裂(分裂1、分裂2和分裂4)用于提取pEC50的增加/减少启动子。在最后,共识建模使用DTC实验室的智能共识工具(https://dtclab。webs.com/software-tools).最初的共识模式,它是通过使用分裂4排列组合四个不同的模型创建的,对验证集更具预测性,测试集(验证集)的决定系数数值从0.8133增加到0.9725。对于分裂4的验证组,平均绝对误差(MAE100%)也从0.513降低至0.2739。
    In the present study, ninety-five halogenated dioxins and related chemicals (dibenzo-p-dioxins, dibenzofurans, biphenyls, and naphthalene) with endpoint pEC50 were used to develop twelve quantitative structure toxicity relationship (QSTR) models using inbuilt Monte Carlo algorithm of CORAL software. The hybrid optimal descriptor of correlation weights (DCW) using a combination of SMILES and HSG (hydrogen suppressed graph) was employed to generate QSTR models. Three target functions i.e. TF1 (WIIC=WCII=0), TF2 (WIIC= 0.3 & WCII=0) and TF3 (WIIC= 0.0 &WCII=0.3) were employed to develop robust QSTR models and the statistical outcomes of each target function were compared with each other. The correlation intensity index (CII) was found a reliable benchmark of the predictive potential for QSTR models. The numerical value of the determination coefficient of the validation set of split 1 computed by TF3 was found highest (RValid2=0.8438). The fragments responsible for the toxicity of dioxins and related chemicals were also identified in terms of the promoter of increase/decrease for pEC50. Three random splits (Split 1, Split 2 and Split 4) were selected for the extraction of the promoter of increase/decrease for pEC50. In the last, consensus modelling was performed using the intelligent consensus tool of DTC lab (https://dtclab.webs.com/software-tools). The original consensus model, which was created by combining four distinct models employing the split 4 arrangement, was more predictive for the validation set and the numerical value of the determination coefficient of the test set (validation set) was increased from 0.8133 to 0.9725. For the validation set of split 4, the mean absolute error (MAE 100%) was also lowered from 0.513 to 0.2739.
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  • 文章类型: Journal Article
    目的:质子微型束放射疗法(pMBRT)是一种新的放射疗法,与常规质子疗法相比,具有神经胶质瘤的大鼠的治疗窗口显着增加。由于所使用的亚毫米子束尺寸,pMBRT的剂量测定是具有挑战性的并且容易出错。这项研究的目的是对当前临床前试验中使用的设置参数进行稳健性分析,并为可重复的剂量测定提供指导。这项工作的结果旨在指导即将在全球范围内实施pMBRT,以及为未来的临床实施铺平道路。
    方法:使用蒙特卡罗模拟和实验数据来评估设置参数的变化和准直器规格的不确定性对横向pMBRT剂量分布的影响。单独修改每个参数的值以评估它们对剂量分布的影响。实验剂量测定是通过高分辨率探测器进行的,也就是说,辐射变色胶片,IBA剃刀和微金刚石探测器。提出了新的指南来优化pMBRT研究中的实验设置并执行可重复的剂量测定。
    结果:量化了剂量分布对设置参数的不确定性和变化的敏感性。定义pMBRT横向轮廓的数量(即,峰谷剂量比[PVDR],峰谷剂量,和峰宽)受到其中几个参数的小规模波动的显着影响。优化了在Orsay质子治疗中心实施的pMBRT辐照的设置,以增加PVDR和峰对称性。此外,我们提出了在临床前研究中进行准确且可重复的剂量测定的指南.
    结论:这项研究揭示了采用针对pMBRT中不同剂量给药方法和剂量分布的指南和方案的重要性。这种新方法导致可重复的剂量测定,这在临床前试验中是必不可少的。本手稿中提供的结果和指南可以简化其他中心pMBRT调查的启动。
    OBJECTIVE: Proton minibeam radiation therapy (pMBRT) is a new radiotherapy approach that has shown a significant increase in the therapeutic window in glioma-bearing rats compared to conventional proton therapy. The dosimetry of pMBRT is challenging and error prone due to the submillimetric beamlet sizes used. The aim of this study was to perform a robustness analysis on the setup parameters utilized in current preclinical trials and provide guidelines for reproducible dosimetry. The results of this work are intended to guide upcoming implementations of pMBRT worldwide, as well as pave the way for future clinical implementations.
    METHODS: Monte Carlo simulations and experimental data were used to evaluate the impact of variations in setup parameters and uncertainties in collimator specifications on lateral pMBRT dose distributions. The value of each parameter was modified individually to evaluate their effect on dose distributions. Experimental dosimetry was performed by means of high-resolution detectors, that is, radiochromic films, the IBA Razor and the Microdiamond detector. New guidelines were proposed to optimize the experimental setup in pMBRT studies and perform reproducible dosimetry.
    RESULTS: The sensitivity of dose distributions to uncertainties and variations in setup parameters was quantified. Quantities that define pMBRT lateral profiles (i.e., the peak-to-valley dose ratio [PVDR], peak and valley doses, and peak width) are significantly influenced by small-scale fluctuations in several of those parameters. The setup implemented at the Orsay proton therapy center for pMBRT irradiation was optimized to increase PVDRs and peak symmetry. In addition, we proposed guidelines to perform accurate and reproducible dosimetry in preclinical studies.
    CONCLUSIONS: This study revealed the importance of adopting guidelines and protocols tailored to the distinct dose delivery method and dose distributions in pMBRT. This new methodology leads to reproducible dosimetry, which is imperative in preclinical trials. The results and guidelines presented in this manuscript can ease the initiation of pMBRT investigations in other centers.
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  • 文章类型: Journal Article
    目的:我们提出了使用蒙特卡洛模拟,基于发生率或风险差异的置信区间,在临床研究中估计实施选择性安全性数据收集(SSDC)的合适患者数量的方法。
    方法:不良事件(AEs)的发生率和风险差异基于安全性结局指标。根据发病率或风险差异的双侧95%置信区间的半宽度等于或小于预先指定的截止值(0.5-3.0%)的概率来估计实施SSDC的合适患者数量。蒙特卡罗模拟用于估计概率为70%的患者的合适数量,80%,和90%。根据与帕尼单抗的实际临床试验数据的发生率或风险差异,证实了我们提出的用于估计SSDC实施的合适患者数量的方法的适用性。
    结果:我们证明了我们提出的方法在估计在几种情况下实施SSDC的合适患者数量方面的性能。此外,根据三项III期临床试验的安全性数据集,使用帕尼单抗常见不良事件的发生率或风险差异来确定实施SSDC的合适患者数量,可以证实我们提出的方法的适用性.
    结论:根据我们提出的方法估计的适当数量的患者可能是实施SSDC的基础之一,因为额外的数据累积可能不会影响常见AE频率估计的准确性。
    We propose methods to estimate a suitable number of patients for implementing selective safety data collection (SSDC) in clinical investigations based on a confidence interval of the incidence rate or risk difference using Monte Carlo simulation.
    The incidence rates and risk differences of adverse events (AEs) were based on the safety outcome measures. A suitable number of patients for implementing SSDC was estimated based on the probability that the half-width of the two-sided 95% confidence interval of incidence rate or risk difference was equal to or less than a pre-specified cut-off value (0.5-3.0%). Monte Carlo simulation was used to estimate the suitable number of patients at probabilities of 70%, 80%, and 90%. The applicability of our proposed method for estimating a suitable number of patients for SSDC implementation was confirmed based on the incidence rates or risk differences from actual clinical trial data for panitumumab.
    We demonstrated the performance of our proposed method in estimating a suitable number of patients to implement SSDC in several situations. Furthermore, according to the safety datasets of three phase III clinical trials, the number of suitable patients for implementing SSDC using incidence rates or risk differences of common AEs with panitumumab could confirm the applicability of our proposed method.
    A suitable number of patients estimated based on our proposed method may be one of the foundations for implementing SSDC, as additional data accrual may not impact the precision of the estimates of the frequency of common AEs.
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  • 文章类型: Journal Article
    美罗培南越来越多地用于治疗新生儿败血症。有几个指南推荐了新生儿美罗培南的不同给药方案。此外,在日常临床实践中经常发生与这些指南的偏差.因此,本研究旨在评估美罗培南给药指南的变化,并比较指南和临床实践在达到目标概率方面的差异。
    本研究基于群体药代动力学模型。在定义了模型的预测性能之后,使用蒙特卡罗模拟来计算美罗培南的当前现有给药指南的目标达到目标的概率及其在日常临床实践中的使用。
    蒙特卡罗模拟中包括了两个指南和两个标签。对于70%fT>MIC(在给药间隔期间游离美罗培南浓度超过最小抑制浓度的时间分数),达到4种推荐剂量目标的概率为59%~88%(MIC=2mg·L-1)和17%~47%(MIC=8mg·L-1).在临床实践评估中,只有20%的患者达到8mg·L-1的MIC目标暴露,70%fT>MIC,远低于食品和药物管理局标签中的那些(40%)。
    这种基于模型的群体药代动力学模拟表明,不正确的指南和/或临床实践偏差将导致感染耐药细菌的患者和危重患者实现目标的可能性较低。重要的是要制定并遵守循证和临床实用的指南。
    Meropenem is increasingly used to treat neonatal sepsis. There are several guidelines recommending different dosing regimens of meropenem in neonates. Furthermore, deviations from these guidelines regularly occur in daily clinical practice. Therefore, the current study aimed to evaluate the variations of meropenem dosing guidelines and compare the difference between guideline and clinical practice in terms of the probability of target attainment.
    This study is based on a population pharmacokinetic model. After defining the predictive performance of the model, Monte Carlo simulations were used to calculate the probability of target attainment of the currently existing dosing guidelines of meropenem and their use in daily clinical practice.
    Two guidelines and two labels were included in the Monte Carlo simulations. For 70% fT>MIC (fraction of time when the free meropenem concentration exceeded the minimum inhibitory concentration during the dosing interval), the probability of target attainment of four recommended doses ranged from 59% to 88% (MIC = 2 mg·L-1 ) and from 17% to 47% (MIC = 8 mg·L-1 ). At the clinical practice evaluation, only 20% of patients attained target exposure for the MIC of 8 mg·L-1 with 70% fT>MIC , which was much less than those found in the Food and Drug Administration labels (40%).
    This model-based population pharmacokinetics simulation showed that improper guidelines and/or clinical practice deviations will result in low probability of target attainment for patients infected with resistant bacteria and critically ill patients. It is important to develop and adhere to evidence-based and clinically pragmatic guidelines.
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  • 文章类型: Journal Article
    To promote consistency in clinical trials by recommending a uniform framework as it relates to radiation transport and dose calculation in water versus in medium.
    The Global Quality Assurance of Radiation Therapy Clinical Trials Harmonisation Group (GHG; www.rtqaharmonization.org) compared the differences between dose to water in water (Dw,w), dose to water in medium (Dw,m), and dose to medium in medium (Dm,m). This was done based on a review of historical frameworks, existing literature and standards, clinical issues in the context of clinical trials, and the trajectory of radiation dose calculations. Based on these factors, recommendations were developed.
    No framework was found to be ideal or perfect given the history, complexity, and current status of radiation therapy. Nevertheless, based on the evidence available, the GHG established a recommendation preferring dose to medium in medium (Dm,m).
    Dose to medium in medium (Dm,m) is the preferred dose calculation and reporting framework. If an institution\'s planning system can only calculate dose to water in water (Dw,w), this is acceptable.
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  • 文章类型: Journal Article
    Numerous guidelines exist for the management of pancreatic cysts. We sought to compare the guideline-directed management strategies for pancreatic cysts by comparing 2 approaches (2017 International Consensus Guidelines and 2015 American Gastroenterological Association Guidelines) that differ significantly in their thresholds for imaging, surveillance, and surgery.
    We developed a Monte Carlo model to evaluate the outcomes for a cohort of 10,000 patients managed per each guideline. The primary outcome was mortality related to pancreatic cyst management. Secondary outcomes included all-cause mortality, missed cancers, number of surgeries, number of imaging studies, cumulative cost, and quality-adjusted life years.
    Deaths because of pancreatic cyst management and quality-adjusted life years were similar in both guidelines at a significantly higher cost of $3.6 million per additional cancer detected in the Consensus Guidelines. Deaths from \"unrelated\" causes (1,422) vastly outnumbered deaths related to pancreatic cysts (125). Secondary outcomes included more missed cancers in the American Gastroenterological Association guideline (71 vs 49), more surgeries and imaging studies in the Consensus guideline (711 vs 163; 116,997 vs 68,912), and higher cost in the Consensus guideline ($168.3 million vs $89.4 million). As the rate of malignant transformation increases, a more-intensive guideline resulted in fewer deaths related to pancreatic cyst management.
    Our study demonstrates trade-offs between more- and less-intensive management strategies for pancreatic cysts. Although deaths related to pancreatic cyst management were similar in each strategy, fewer missed cancers in the more-intensive surveillance strategy is offset by a greater number of surgical deaths and higher cost. In conclusion, our study identifies that if the rate malignant transformation of pancreatic cysts is low (0.12% annually), a less-intensive guideline will result in similar deaths to a more-intensive guideline at a much lower cost.
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  • 文章类型: Journal Article
    Systematic, automated methods for monitoring physician performance are necessary if outlying behavior is to be detected promptly and acted on. In the Michigan Urological Surgery Improvement Collaborative (MUSIC), we evaluated several statistical process control (SPC) methods to determine the sensitivity and ease of interpretation for assessing adherence to imaging guidelines for patients with newly diagnosed prostate cancer.
    Following dissemination of imaging guidelines within the Michigan Urological Surgery Improvement Collaborative (MUSIC) for men with newly diagnosed prostate cancer, MUSIC set a target of imaging < 10% of patients for which bone scan is not indicated. We compared four SPC methods using Monte Carlo simulation: p-chart, weighted binomial CUSUM, Bernoulli cumulative sum (CUSUM), and exponentially weighted moving average (EWMA). We simulated non-indicated bone scan rates ranging from 5.9% (within target) to 11.4% (above target) for a representative MUSIC practice. Sensitivity was determined using the average run length (ARL), the time taken to signal a change. We then plotted actual non-indicated bone scan rates for a representative MUSIC practice using each SPC method to qualitatively assess graphical interpretation.
    EWMA had the lowest ARL and was able to detect changes significantly earlier than the other SPC methodologies (p < 0.001). The p-chart had the highest ARL and thus detected changes slowest (p < 0.001). EWMA and p-charts were easier to interpret graphically than CUSUM methods due to their ability to display historical imaging rates.
    SPC methods can be used to provide informative and timely feedback regarding adherence to healthcare performance target rates in quality improvement collaboratives. We found the EWMA method most suited for detecting changes in imaging utilization.
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  • 文章类型: Journal Article
    The IAEA is currently coordinating a multi-year project to update the TRS-398 Code of Practice for the dosimetry of external beam radiotherapy based on standards of absorbed dose to water. One major aspect of the project is the determination of new beam quality correction factors, k Q , for megavoltage photon beams consistent with developments in radiotherapy dosimetry and technology since the publication of TRS-398 in 2000. Specifically, all values must be based on, or consistent with, the key data of ICRU Report 90. Data sets obtained from Monte Carlo (MC) calculations by advanced users and measurements at primary standards laboratories have been compiled for 23 cylindrical ionization chamber types, consisting of 725 MC-calculated and 179 experimental data points. These have been used to derive consensus k Q values as a function of the beam quality index TPR20,10 with a combined standard uncertainty of 0.6%. Mean values of MC-derived chamber-specific [Formula: see text] factors for cylindrical and plane-parallel chamber types in 60Co beams have also been obtained with an estimated uncertainty of 0.4%.
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  • 文章类型: Journal Article
    To address the situation where the complete consistency is unnecessary, a stepwise optimization model-based method for testing the acceptably additive consistency (AAC) of hesitant fuzzy preference relations (HFPRs) is introduced. Then, an AAC concept for HFPRs is defined. Meanwhile, incomplete HFPRs (iHFPRs) are discussed and a series of optimization models to acquire complete HFPRs is constructed. If the consistency is unacceptable, an optimization model for revising unacceptably consistent HFPRs under the conditions of the AAC and maximizing the ordinal consistency (OC) is offered. Subsequently, a model for minimizing the number of adjusted variables is presented. Considering the weighting information and the consensus for group decision making (GDM), the weights of fuzzy preference relations (FPRs) obtained from each individual HFPR and the decision makers (DMs) are determined using the distance measure. With regard to the consensus, two models for reaching the consensus requirement and minimizing the amount of revised variables are separately constructed, which are both based on the analysis of maximizing the OC. Furthermore, the thresholds of the additive consistency and the consensus are studied using the Monte Carlo simulation method. A GDM algorithm with HFPRs is offered. Finally, an example and comparison are provided to show the efficiency of the new procedure.
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  • 文章类型: Comparative Study
    已提议加强对孕妇和哺乳期妇女的病毒载量监测,以帮助解决有关抗逆转录病毒疗法(ART)依从性的问题。病毒血症和传播风险,但是没有对现有政策进行系统的评估。
    我们使用单独的蒙特卡罗模拟来描述从受孕到产后2年的纵向ART依从性和病毒载量。我们将国家和国际病毒载量监测指南应用于模拟数据。我们比较了接受病毒载量监测的女性百分比和病毒载量升高时监测的女性百分比的指南。
    孕期和哺乳期病毒载量监测的覆盖率差异显著,14%至100%的妇女进行了产前监测,而38-98%的妇女在母乳喂养期间进行了监测。在固定妊娠或短期进行测试的具体建议,ART开始后的固定时期在怀孕期间实现了超过95%的检测,但在没有特殊规定的指南中,这一比例要低得多(14-83%)。母乳喂养结束时,通过监测,只有一小部分病毒载量高于1000拷贝/毫升的模拟发作被成功检测到(范围,20-50%)。
    尽管需要进一步的研究来了解该人群中最佳的病毒载量频率和时间,这些结果表明,目前的政策对孕妇和哺乳期妇女的病毒载量升高的检测效果欠佳.
    Intensified viral load monitoring for pregnant and breastfeeding women has been proposed to help address concerns around antiretroviral therapy (ART) adherence, viraemia and transmission risk, but there have been no systematic evaluations of existing policies.
    We used an individual Monte Carlo simulation to describe longitudinal ART adherence and viral load from conception until 2 years\' postpartum. We applied national and international guidelines for viral load monitoring to the simulated data. We compared guidelines on the percentage of women receiving viral load monitoring and the percentage of women monitored at the time of elevated viral load.
    Coverage of viral load monitoring in pregnancy and breastfeeding varied markedly, with between 14% and 100% of women monitored antenatally and 38-98% monitored during breastfeeding. Specific recommendations for testing at either a fixed gestation or a short, fixed period after ART initiation achieved more than 95% testing in pregnancy but this was much lower (14-83%) among guidelines with no special stipulations. By the end of breastfeeding, only a small proportion of simulated episodes of elevated viral load more than 1000 copies/ml were successfully detected by monitoring (range, 20-50%).
    Although further research is needed to understand optimal viral load frequency and timing in this population, these results suggest that current policies yield suboptimal detection of elevated viral load in pregnant and breastfeeding women.
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