Liquid biopsy

液体活检
  • 文章类型: Journal Article
    肺癌仍然是新加坡癌症相关死亡的重要原因,在过去的20年中,被诊断为非小细胞肺癌(NSCLC)的非吸烟者比例更高。与西方国家相比,新加坡诊断的肺癌中可靶向基因组改变的患病率更高,以及精准医学时代非小细胞肺癌不断扩大的治疗前景,这两个因素都强调了高效和有效的分子谱分析的重要性。
    本文为晚期非小细胞肺癌早期生物标志物检测提供了共识建议。这些建议是由新加坡的一个多学科肺癌专家小组提出的,目的是改善患者护理和长期预后。
    这些建议解决了高级和早期设置中的注意事项,并考虑到生物标志物测试实施中的挑战以及可用数据的局限性。讨论了肿瘤组织和液体活检的生物标志物测试。
    本共识声明讨论了将分子检测纳入早期至晚期NSCLC患者临床实践的方法和挑战。并为新加坡NSCLC患者的生物标志物检测提供实用建议。
    UNASSIGNED: Lung cancer remains an important cause of cancer-related mortality in Singapore, with a greater proportion of non-smokers diagnosed with non-small cell lung cancer (NSCLC) in the past 2 decades. The higher prevalence of targetable genomic alterations in lung cancer diagnosed in Singapore compared with countries in the West, as well as the expanding therapeutic landscape for NSCLC in the era of precision medicine, are both factors that underscore the importance of efficient and effective molecular profiling.
    UNASSIGNED: This article provides consensus recommendations for biomarker testing for early-stage to advanced NSCLC. These recommendations are made from a multidisciplinary group of lung cancer experts in Singapore with the aim of improving patient care and long-term outcomes.
    UNASSIGNED: The recommendations address the considerations in both the advanced and early-stage settings, and take into account challenges in the implementation of biomarker testing as well as the limitations of available data. Biomarker testing for both tumour tissue and liquid biopsy are discussed.
    UNASSIGNED: This consensus statement discusses the approaches and challenges of integrating molecular testing into clinical practice for patients with early- to late-stage NSCLC, and provides practical recommendations for biomarker testing for NSCLC patients in Singapore.
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  • 文章类型: Journal Article
    诊断,选择治疗,使用微创血液检测监测患者的癌症代表了精准医学的重大进步。循环肿瘤DNA(ctDNA)测定的发展存在很大的差异,已验证,并在文献中报道,这阻碍了临床采用,并可能对患者护理产生负面影响。影响ctDNA测定性能和报告的因素需要标准化,包括分析前变量,分析性考虑,和实验室化验报告的要素。分子病理学临床实践委员会液体活检工作组协会(LBxWG),包括美国临床肿瘤学会和美国病理学家学院的组织代表,已对1,228个ctDNA出版物进行了全文数据提取,这些出版物描述了在淋巴瘤和实体瘤恶性肿瘤患者中进行的测定。强调临床化验验证,LBxWG制定了一套13个最佳实践共识建议,用于验证,reporting,并发表临床ctDNA分析。建议包括报告关键的分析前考虑因素和测定性能指标;该分析表明这些元素不一致地包含在出版物中。LBxWG建议旨在帮助临床实验室验证和报告ctDNA测定,并确保高质量数据包含在出版物中。预计随着文献的不断成熟,这些建议将需要更新。
    Diagnosing, selecting therapy for, and monitoring cancer in patients using a minimally invasive blood test represents a significant advance in precision medicine. Wide variability exists in how circulating tumor DNA (ctDNA) assays are developed, validated, and reported in the literature, which hinders clinical adoption and may negatively impact patient care. Standardization is needed for factors affecting ctDNA assay performance and reporting, including pre-analytical variables, analytical considerations, and elements of laboratory assay reporting. The Association for Molecular Pathology Clinical Practice Committee\'s Liquid Biopsy Working Group (LBxWG), including organizational representation from the American Society of Clinical Oncology and the College of American Pathologists, has undertaken a full-text data extraction of 1228 ctDNA publications that describe assays performed in patients with lymphoma and solid tumor malignancies. With an emphasis on clinical assay validation, the LBxWG has developed a set of 13 best practice consensus recommendations for validating, reporting, and publishing clinical ctDNA assays. Recommendations include reporting key pre-analytical considerations and assay performance metrics; this analysis demonstrates these elements are inconsistently included in publications. The LBxWG recommendations are intended to assist clinical laboratories with validating and reporting ctDNA assays and to ensure high-quality data are included in publications. It is expected that these recommendations will need to be updated as the body of literature continues to mature.
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  • 文章类型: Journal Article
    间充质-上皮转化外显子14(METex14)跳跃突变发生在约3%-4%的非小细胞肺癌(NSCLC)患者中。这是一种与不良预后相关的侵袭性亚型。METex14跳跃是一种潜在的可靶向突变。靶向治疗是晚期/转移性METex14突变型NSCLC患者的有希望的治疗方式。进行系统的分子检测以检测驱动突变对于启动靶向治疗至关重要。然而,目前缺乏评估患者是否适合接受靶向治疗的分子检测指南.因此,由中东专家组成的多学科小组,非洲,和俄罗斯通过虚拟顾问委员会会议召开会议,提供他们对METex14跳跃突变诊断的各种分子检测技术的见解,对患者进行有针对性的治疗,并制定改进流程的共识建议。专家小组强调在治疗开始前进行分子检测和液体活检,并对分子检测失败的患者进行组织重新活检。建议液体活检作为组织活检的补充,用于疾病监测和预后。选择性MET抑制剂被推荐作为第一和随后的治疗路线。这些共识建议将促进常规实践中METex14跳过NSCLC的管理,并保证这些患者的最佳结局。
    Mesenchymal-epithelial transition exon 14 (METex14) skipping mutations occur in about 3%-4% of patients with non-small cell lung cancer (NSCLC). This is an aggressive subtype associated with poor prognosis. METex14 skipping is a potentially targetable mutation. Targeted therapy is a promising treatment modality for patients with advanced/metastatic METex14-mutant NSCLC. Performing systematic molecular testing to detect the driver mutation is essential for initiating targeted therapy. However, there is a lack of guidelines on molecular testing for assessing the eligibility of patients for targeted therapy. Therefore, a multidisciplinary panel consisting of experts from the Middle East, Africa, and Russia convened via a virtual advisory board meeting to provide their insights on various molecular testing techniques for the diagnosis of METex14 skipping mutation, management of patients with targeted therapies, and developing consensus recommendations for improving the processes. The expert panel emphasized performing molecular testing and liquid biopsy before treatment initiation and tissue re-biopsy for patients with failed molecular testing. Liquid biopsy was recommended as complementary to tissue biopsy for disease monitoring and prognosis. Selective MET inhibitors were recommended as the first and subsequent lines of therapy. These consensus recommendations will facilitate the management of METex14 skipping NSCLC in routine practice and warrant optimum outcomes for these patients.
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  • 文章类型: Journal Article
    背景:大多数发表的NSCLC基因组生物标志物检测指南反映了在欧洲和北美容易获得的疾病流行病学和治疗方法。然而,全球每年60%的非小细胞肺癌病例发生在亚洲,患者特征,肿瘤分子谱,治疗方法与西方世界差异很大。例如,EGFR突变在亚洲的患病率高于世界其他地区.尽管国际肺癌研究协会等医学协会,欧洲医学肿瘤学会,和美国临床肿瘤学会已经描述了NSCLC中肿瘤基因组生物标志物测试的原理,需要针对亚洲的具体建议。
    方法:本报告为亚洲肺癌专家提供了NSCLC生物标志物检测的共识建议,供在亚洲工作的临床医生使用,以改善患者护理。EGFR可操作遗传改变的生物标志物测试方法,ALK,对ROS1等进行了讨论。
    结果:这些建议分为非转移性和转移性腺癌和鳞状细胞癌。由于EGFR突变在亚洲的患病率较高,专家们强调,EGFR检测不仅需要包括常见突变(外显子19缺失和L858R取代),还需要包括其他不常见的EGFR突变.除了评估肿瘤组织中的生物标志物,讨论了通过液体活检评估肿瘤生物标志物的作用。
    结论:这一共识为非转移性和转移性亚洲非小细胞肺癌患者的生物标志物检测提供了切实可行的建议。
    Most published guidelines for genomic biomarker testing in NSCLC reflect the disease epidemiology and treatments readily available in Europe and North America. Nevertheless, 60% of annual global NSCLC cases occur in Asia, where patient characteristics, tumor molecular profiles, and treatments vary greatly from the Western world. For example, mutations in the EGFR occur at a higher prevalence in Asia than in other world regions. Although medical associations such as the International Association for the Study of Lung Cancer, European Society for Medical Oncology, and American Society of Clinical Oncology have described principles for tumor genomic biomarker testing in NSCLC, there is a need for recommendations specific for Asia.
    This report provides consensus recommendations for NSCLC biomarker testing from Asian lung cancer experts for clinicians working in Asia to improve patient care. Biomarker testing approaches for actionable genetic alterations in EGFR, ALK, ROS1, and others are discussed.
    These recommendations are divided into nonmetastatic and metastatic forms of adenocarcinoma and squamous cell carcinoma. Owing to the higher prevalence of EGFR mutations in Asia, the experts emphasized the need for EGFR testing to include not just common mutations (exon 19 deletions and L858R substitutions) but also other uncommon EGFR mutations. In addition to the assessment of biomarkers in the tumor tissue, the role of assessing tumor biomarkers by liquid biopsy is discussed.
    This consensus provides practical recommendations for biomarker testing in nonmetastatic and metastatic Asian NSCLC patients.
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  • 文章类型: Journal Article
    近年来,前列腺癌(PC)基因检测的适应症已从有前列腺癌和/或相关癌症家族史的患者扩展到患有晚期去势抵抗疾病的患者,甚至对早期PC患者进行主动监测是否合适。目前的共识旨在为泌尿科医师提供指导,肿瘤学家和病理学家与亚洲PC患者合作,研究在选定人群中测试谁和什么。
    香港泌尿外科协会和香港肿瘤学会的联合共识小组在一系列5个物理和虚拟会议上召开。在PubMed中进行了关于PC基因检测的背景文献检索,ClinicalKey,EBSCOHost,Ovid和ProQuest,并成立了三个工作分组审查和提出相关证据。会议议程采用了修改后的德尔菲方法,以确保讨论以结构化的方式进行,迭代和平衡的方式,随后对候选人声明进行了匿名投票。在5个可用的答案选项中,如果≥75%的小组成员选择“完全接受”(选项A)或“保留接受”(选项B),则接受共识声明。
    共识分为三个部分:测试适应症,测试方法,和治疗意义。列出了35份候选陈述,其中31人被接受。这些声明解决了将PC基因检测数据和指南应用于亚洲患者的问题,包括进行种系测试的患者选择,基因组和组织样本的选择,提供遗传咨询,以及在转移性去势耐药的PC患者中使用新型全身治疗方法。
    这一共识为泌尿科医师提供了指导,肿瘤学家和病理学家与亚洲患者一起研究基因检测的适应症,测试方法和技术考虑,以及相关的治疗意义。
    UNASSIGNED: In recent years, indications for genetic testing in prostate cancer (PC) have expanded from patients with a family history of prostate and/or related cancers to those with advanced castration-resistant disease, and even to early PC patients for determination of the appropriateness of active surveillance. The current consensus aims to provide guidance to urologists, oncologists and pathologists working with Asian PC patients on who and what to test for in selected populations.
    UNASSIGNED: A joint consensus panel from the Hong Kong Urological Association and Hong Kong Society of Uro-Oncology was convened over a series of 5 physical and virtual meetings. A background literature search on genetic testing in PC was performed in PubMed, ClinicalKey, EBSCOHost, Ovid and ProQuest, and three working subgroups were formed to review and present the relevant evidence. Meeting agendas adopted a modified Delphi approach to ensure that discussions proceed in a structured, iterative and balanced manner, which was followed by an anonymous voting on candidate statements. Of 5 available answer options, a consensus statement was accepted if ≥ 75% of the panelists chose \"Accept Completely\" (Option A) or \"Accept with Some Reservation\" (Option B).
    UNASSIGNED: The consensus was structured into three parts: indications for testing, testing methods, and therapeutic implications. A list of 35 candidate statements were developed, of which 31 were accepted. The statements addressed questions on the application of PC genetic testing data and guidelines to Asian patients, including patient selection for germline testing, selection of gene panel and tissue sample, provision of genetic counseling, and use of novel systemic treatments in metastatic castration-resistant PC patients.
    UNASSIGNED: This consensus provides guidance to urologists, oncologists and pathologists working with Asian patients on indications for genetic testing, testing methods and technical considerations, and associated therapeutic implications.
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  • 文章类型: Journal Article
    综合基因组分析越来越多地用于促进基于分子分层的精确肿瘤学。除了常规的组织综合基因组分析,循环肿瘤DNA的全面基因组分析由于其优势已广泛用于癌症治疗,包括更少的侵入性,快速的周转时间,并捕获异质性。然而,循环肿瘤DNA综合基因组谱分析有一定的局限性,主要是由于血浆循环肿瘤脱氧核糖核酸水平低引起的假阴性和克隆造血引起的假阳性。然而,没有准则和建议完全解决这些问题。这里,由日本12家癌症基因组医学指定核心医院的代表组成的专家小组委员会,为使用基于循环肿瘤脱氧核糖核酸的综合基因组谱分析制定了专家共识建议.目的是为临床医生和相关医疗保健专业人员制定有关在晚期实体瘤中最佳使用循环肿瘤DNA测定的指南,并帮助设计未来的临床试验,这些临床试验利用和开发循环肿瘤DNA测定以完善精确的肿瘤学。通过搜索和整理相关文献,建立了关于循环肿瘤脱氧核糖核酸综合基因组分析的14个临床问题,包括测试时间和解释结果的考虑因素。并根据文献为每个临床问题准备了相应的建议。最终协商一致建议是通过表决制定的,以确定委员会成员的每项建议的级别。
    Comprehensive genomic profiling is increasingly used to facilitate precision oncology based on molecular stratification. In addition to conventional tissue comprehensive genomic profiling, comprehensive genomic profiling of circulating tumor DNA has become widely utilized in cancer care owing on its advantages, including less invasiveness, rapid turnaround time, and capturing heterogeneity. However, circulating tumor DNA comprehensive genomic profiling has some limitations, mainly false negatives due to low levels of plasma circulating tumor deoxyribonucleic acid and false positives caused by clonal hematopoiesis. Nevertheless, no guidelines and recommendations fully address these issues. Here, an expert panel committee involving representatives from 12 Designated Core Hospitals for Cancer Genomic Medicine in Japan was organized to develop expert consensus recommendations for the use of circulating tumor deoxyribonucleic acid-based comprehensive genomic profiling. The aim was to generate guidelines for clinicians and allied healthcare professionals on the optimal use of the circulating tumor DNA assays in advanced solid tumors and to aid the design of future clinical trials that utilize and develop circulating tumor DNA assays to refine precision oncology. Fourteen clinical questions regarding circulating tumor deoxyribonucleic acid comprehensive genomic profiling including the timing of testing and considerations for interpreting results were established by searching and curating associated literatures, and corresponding recommendations were prepared based on the literature for each clinical question. Final consensus recommendations were developed by voting to determine the level of each recommendation by the Committee members.
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  • 文章类型: Journal Article
    循环无细胞DNA(cirDNA)的甲基化分析,作为液体活检,有很大的潜力来推进检测,预后,和癌症的治疗,以及许多遗传性疾病。表观遗传学在疾病发展中的作用已经在几种遗传性疾病中被报道,和表观遗传修饰被认为是癌变过程中出现的最早和最重要的基因组畸变之一。液体活检可用于检测这些表观遗传生物标志物。它包括隔离(分析前)和检测(分析)阶段。包括cirDNA提取和亚硫酸氢盐转化方法的分析前变量的选择可以影响cirDNA甲基化的鉴定。的确,不同的技术会产生不同的cirDNA,这证实了预分析程序在临床诊断中的重要性。尽管已经开发了简化甲基化分析的新技术,这个过程仍然很复杂,作为DNA提取的步骤,亚硫酸氢盐处理,和甲基化检测分别进行。最近的研究已经注意到不存在用于甲基化环状DNA的预分析处理的任何标准方法。因此,我们对重要的分析前和分析变量以及患者相关因素进行了全面而系统的回顾,这些因素构成了我们分析液体活检中甲基化环状DNA的指南的基础。
    Methylation analysis of circulating cell-free DNA (cirDNA), as a liquid biopsy, has a significant potential to advance the detection, prognosis, and treatment of cancer, as well as many genetic disorders. The role of epigenetics in disease development has been reported in several hereditary disorders, and epigenetic modifications are regarded as one of the earliest and most significant genomic aberrations that arise during carcinogenesis. Liquid biopsy can be employed for the detection of these epigenetic biomarkers. It consists of isolation (pre-analytical) and detection (analytical) phases. The choice of pre-analytical variables comprising cirDNA extraction and bisulfite conversion methods can affect the identification of cirDNA methylation. Indeed, different techniques give a different return of cirDNA, which confirms the importance of pre-analytical procedures in clinical diagnostics. Although novel techniques have been developed for the simplification of methylation analysis, the process remains complex, as the steps of DNA extraction, bisulfite treatment, and methylation detection are each carried out separately. Recent studies have noted the absence of any standard method for the pre-analytical processing of methylated cirDNA. We have therefore conducted a comprehensive and systematic review of the important pre-analytical and analytical variables and the patient-related factors which form the basis of our guidelines for analyzing methylated cirDNA in liquid biopsy.
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  • 文章类型: Journal Article
    Although precision medicine has had a mixed impact on the clinical management of patients with advanced-stage cancer overall, for NSCLC, and more specifically for lung adenocarcinoma, the advances have been dramatic, largely owing to the genomic complexity and growing number of druggable oncogene drivers. Furthermore, although tumor tissue is historically the \"accepted standard\" biospecimen for these molecular analyses, there are considerable innate limitations. Thus, liquid biopsy represents a practical alternative source for investigating tumor-derived somatic alterations. Although data are most robust in NSCLC, patients with other cancer types may also benefit from this minimally invasive approach to facilitate selection of targeted therapies. The liquid biopsy approach includes a variety of methodologies for circulating analytes. From a clinical point of view, plasma circulating tumor DNA is the most extensively studied and widely adopted alternative to tissue tumor genotyping in solid tumors, including NSCLC, first entering clinical practice for detection of EGFR mutations in NSCLC. Since the publication of the first International Association for the Study of Lung Cancer (IASLC) liquid biopsy statement in 2018, several additional advances have been made in this field, leading to changes in the therapeutic decision-making algorithm for advanced NSCLC and prompting this 2021 update. In view of the novel and impressive technological advances made in the past few years, the growing clinical application of plasma-based, next-generation sequencing, and the recent Food and Drug and Administration approval in the United States of two different assays for circulating tumor DNA analysis, IASLC revisited the role of liquid biopsy in therapeutic decision-making in a recent workshop in October 2020 and the question of \"plasma first\" versus \"tissue first\" approach toward molecular testing for advanced NSCLC. Moreover, evidence-based recommendations from IASLC provide an international perspective on when to order which test and how to interpret the results. Here, we present updates and additional considerations to the previous statement article as a consensus from a multidisciplinary and international team of experts selected by IASLC.
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  • 文章类型: Letter
    暂无摘要。
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  • 文章类型: Journal Article
    The proportion of cancer patients with tumours that harbour a potentially targetable genomic alteration is increasing considerably. The diagnosis of these genomic alterations can lead to tailoring of treatment, at the onset of disease or during progression, as well as providing additional, predictive information on the efficacy of immunotherapy. However, in up to 25% of cases, the initial tissue biopsy is inadequate for precision oncology and, in many cases, tumour genomic profiling at progression is not possible due to technical limitations of obtaining new tumour tissue specimens. Efficient diagnostic alternatives are therefore required for molecular stratification, such as liquid biopsy. This technique enables the evaluation of the tumour genomic profile dynamically and as well as capturing intra-patient genomic heterogeneity. To date, there are several diagnostic techniques available for use in liquid biopsy, each with different precision and performance levels. The objective of this consensus statement of the Spanish Society of Pathology (SEAP) and the Spanish Society of Medical Oncology (SEOM) is to evaluate the viability and effectiveness of the different methodological approaches of liquid biopsy in cancer patients, and the potential application of this method to current clinical practice. The experts contributing to this consensus statement agree that, according to current evidence, liquid biopsy is an acceptable alternative to tumour tissue biopsy for the study of biomarkers in various clinical settings. It is therefore important to standardise pre-analytical and analytical procedures to ensure reproducibility and to generate structured and accessible clinical reports. It is essential to appoint multidisciplinary tumour molecular committees to oversee these processes and to enable the most suitable therapeutic decisions for each patient according to the genomic profile.
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