Haploinsufficiency

单倍功能不全
  • 文章类型: Journal Article
    背景:孤立的SHOX单倍体不足是身材矮小的常见单基因原因。很少有研究比较未治疗和rhGH治疗的患者直至成人身高(AH)。我们的研究强调了SHOX单倍体功能不全患者从儿童期到AH的生长模式,并分析了rhGH单独或加上GnRH类似物(GnRHa)的真实世界有效性。
    方法:一项纵向回顾性研究纳入了47例SHOX单倍体功能不全患者(18例未经治疗和29例rhGH治疗)。13例未经治疗和18例接受rhGH治疗(单独使用rhGH[n=8]或加上GnRHa[n=10])的患者达到了成年身高。
    结果:未治疗组身高SDS从基线下降至AH(-0.8[-1.1;-0.4]),身材矮小的患病率从31%增加到77%。相反,rhGH治疗组的身高SDS从基线到AH有改善(0.6[0.2;0.6];p<0.001),身材矮小的患病率降低(从61%降至28%)。rhGH治疗的患者的AH比未治疗的患者高1SD(6.3cm)。关于GnRHa的使用,亚组(rhGH单独或加上GnRHa)获得相似的AH,尽管在使用联合治疗的患者中,青春期患者的患病率较高,并且在rhGH治疗开始时AH预测较差。
    结论:使用rhGH治疗可改善SHOX单倍体功能不全患者的AH,防止青春期身高潜能的丧失。在青春期患者中,在rhGH中添加GnRHa可使AH达到类似于在青春期前开始单独使用rhGH的患者的AH。
    BACKGROUND: Isolated SHOX haploinsufficiency is a common monogenic cause of short stature. Few studies compare untreated and rhGH-treated patients up to adult height (AH). Our study highlights a growth pattern from childhood to AH in patients with SHOX haploinsufficiency and analyzes the real-world effectiveness of rhGH alone or plus GnRH analog (GnRHa).
    METHODS: Forty-seven patients (18 untreated and 29 rhGH-treated) with SHOX haploinsufficiency were included in a longitudinal retrospective study. Adult height was attained in 13 untreated and 18 rhGH-treated (rhGH alone [n = 8] or plus GnRHa [n = 10]) patients.
    RESULTS: The untreated group decreased height SDS from baseline to AH (-0.8 [-1.1; -0.4]), with an increase in the prevalence of short stature from 31% to 77%. Conversely, the rhGH-treated group had an improvement in height SDS from baseline to AH (0.6 [0.2; 0.6]; p < 0.001), with a reduction in the prevalence of short stature (from 61% to 28%). AH in the rhGH-treated patients was 1 SD (6.3 cm) taller than in untreated ones. Regarding the use of GnRHa, the subgroups (rhGH alone or plus GnRHa) attained similar AH, despite the higher prevalence of pubertal patients and worse AH prediction at the start of rhGH treatment in patients who used combined therapy.
    CONCLUSIONS: The use of rhGH treatment improves AH in patients with SHOX haploinsufficiency, preventing the loss of height potential during puberty. In peripubertal patients, the addition of GnRHa to rhGH allows AH attainment similar to the AH of patients who start rhGH alone in the prepubertal age.
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  • 文章类型: Journal Article
    目的:癫痫是MEF2C杂合变异引起的常染色体显性遗传智力低下综合征的主要表现。我们旨在描述MEF2C单倍体功能不全患者的电临床特征并完善基因型-表型相关性。
    方法:我们彻底调查了来自12个不同的欧洲遗传学和癫痫中心的25例基因确诊的MEF2C综合征患者,专注于癫痫表型。临床特征(癫痫发作类型,发病,进化,和对治疗的反应),清醒/睡眠期间的脑电图记录,和神经影像学检查结果进行了分析。我们还使用术语“MEF2C”进行了详细的文献综述,“癫痫发作”,和“癫痫”。
    结果:在25名受试者中有19名(〜80%)被诊断为癫痫,发病年龄<30个月。约50%的患者中有10例(40%)出现高热惊厥和肌阵挛性惊厥。在20/25例患者(80%)中观察到癫痫样异常,在12/25例患者(〜50%)中检测到call体发育不全/部分发育不全。9名患者携带包含MEF2C和至少一个其他基因的5q14.3缺失。在10名肌阵挛性癫痫发作的患者中,MIR9-2和LINC00461也被删除,而ADGRV1涉及3/4的痉挛患者。
    结论:MEF2C综合征的癫痫表型是可变的。高热和肌阵挛性癫痫发作是最常见的,通常与背景活动的减慢和正面优势的不规则弥散放电有关,对称或不对称,具有插入的尖峰和波复合物的慢θ波。ADGRV1,MIR9-2和LINC00461的单倍体功能不全可能导致MEF2C综合征患者的肌阵挛性癫痫发作和痉挛。
    OBJECTIVE: Epilepsy is a main manifestation in the autosomal dominant mental retardation syndrome caused by heterozygous variants in MEF2C. We aimed to delineate the electro-clinical features and refine the genotype-phenotype correlations in patients with MEF2C haploinsufficiency.
    METHODS: We thoroughly investigated 25 patients with genetically confirmed MEF2C-syndrome across 12 different European Genetics and Epilepsy Centers, focusing on the epileptic phenotype. Clinical features (seizure types, onset, evolution, and response to therapy), EEG recordings during waking/sleep, and neuroimaging findings were analyzed. We also performed a detailed literature review using the terms \"MEF2C\", \"seizures\", and \"epilepsy\".
    RESULTS: Epilepsy was diagnosed in 19 out of 25 (~80%) subjects, with age at onset <30 months. Ten individuals (40%) presented with febrile seizures and myoclonic seizures occurred in ~50% of patients. Epileptiform abnormalities were observed in 20/25 patients (80%) and hypoplasia/partial agenesis of the corpus callosum was detected in 12/25 patients (~50%). Nine patients harbored a 5q14.3 deletion encompassing MEF2C and at least one other gene. In 7 out of 10 patients with myoclonic seizures, MIR9-2 and LINC00461 were also deleted, whereas ADGRV1 was involved in 3/4 patients with spasms.
    CONCLUSIONS: The epileptic phenotype of MEF2C-syndrome is variable. Febrile and myoclonic seizures are the most frequent, usually associated with a slowing of the background activity and irregular diffuse discharges of frontally dominant, symmetric or asymmetric, slow theta waves with interposed spike-and-waves complexes. The haploinsufficiency of ADGRV1, MIR9-2, and LINC00461 likely contributes to myoclonic seizures and spasms in patients with MEF2C syndrome.
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  • 文章类型: Journal Article
    Mutations in the filaggrin gene (FLG) affect epidermal barrier function and increase the risk of atopic dermatitis (AD). We hypothesized that FLG mutations affect immune cell composition in a general pediatric population. Therefore, we investigated whether school-aged children with and without FLG mutations have differences in T- and B-cell subsets.
    This study was embedded in a population-based prospective cohort study, the Generation R Study, and included 523 children of European genetic ancestry aged 10 years. The most common FLG mutations in the European population (R501X, S1085CfsX36, R2447X, and S3247X) were genotyped. Additionally, 11-color flow cytometry was performed on peripheral blood samples to determine helper T (Th), regulatory T (Treg), and CD27+ and CD27- memory B cells. Subset analysis was performed in 358 non-AD and 102 AD cases, assessed by parental questionnaires.
    FLG mutations were observed in 8.4% of the total population and in 15.7% of the AD cases. Children with any FLG mutation had higher Th22 cell numbers compared to FLG wild-type children in the general and non-AD population. Children with and without FLG mutations had no difference in Th1, Th2, Th17, Treg, or memory B-cell numbers. Furthermore, in children with AD, FLG mutation carriership was not associated with differences in T- and B-cell subsets.
    School-aged children of a general population with FLG mutations have higher Th22 cell numbers, which reflects the immunological response to the skin barrier dysfunction. FLG mutations did not otherwise affect the composition of the adaptive immunity in this general pediatric population.
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  • 文章类型: Journal Article
    背景:FOXG1基因在哺乳动物的脑分化和发育中起着至关重要的作用。导致功能丧失或FOXG1基因表达改变的基因内和基因间突变引起FOXG1综合征。这种综合征的特征是严重的发育迟缓,缺乏口头语言,产后生长受限,产后小头畸形,以及以舞蹈症和肌张力障碍为特征的可识别的运动障碍。
    方法:在这里,我们描述了一例7岁男性患者,该患者通过G带染色体和荧光原位杂交(FISH)分析,发现3号染色体3q14.1带和14号染色体14q12带之间存在从头平衡易位。这种重排破坏了FOXG1与先前描述的最小缺失重叠区(SRO)的接近度,可能导致单倍体不足。
    结论:该病例增加了越来越多的文献,表明染色体结构变异与该疾病的表现有关,并强调了顺式调节元件在该基因正常表达中的重要作用。最后,我们提出了反射FISH分析方案,以提高疑似FOXG1综合征患者的诊断效率.
    BACKGROUND: The FOXG1 gene plays a vital role in mammalian brain differentiation and development. Intra- and intergenic mutations resulting in loss of function or altered expression of the FOXG1 gene cause FOXG1 syndrome. The hallmarks of this syndrome are severe developmental delay with absent verbal language, post-natal growth restriction, post-natal microcephaly, and a recognizable movement disorder characterized by chorea and dystonia.
    METHODS: Here we describe a case of a 7-year-old male patient found to have a de novo balanced translocation between chromosome 3 at band 3q14.1 and chromosome 14 at band 14q12 via G-banding chromosome and Fluorescence In Situ Hybridization (FISH) analyses. This rearrangement disrupts the proximity of FOXG1 to a previously described smallest region of deletion overlap (SRO), likely resulting in haploinsufficiency.
    CONCLUSIONS: This case adds to the growing body of literature implicating chromosomal structural variants in the manifestation of this disorder and highlights the vital role of cis-acting regulatory elements in the normal expression of this gene. Finally, we propose a protocol for reflex FISH analysis to improve diagnostic efficiency for patients with suspected FOXG1 syndrome.
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  • 文章类型: Journal Article
    遗传BRCA1或BRCA2突变的女性患乳腺癌的风险增加。初步证据表明它们也可能存在骨髓功能缺陷。为了检验这个假设,我们进行了一个多中心,回顾性,配对队列研究,将需要细胞毒性化疗且携带遗传BRCA1或BRCA2突变的局部乳腺癌女性与1995年至2017年间治疗的相似野生型患者进行比较,并根据年龄进行匹配,种族,site,和化疗方案。出现特定血液学毒性的比例,这些毒性的时间,比较了BRCA1携带者与匹配的野生型患者之间以及BRCA2携带者与匹配的野生型患者之间随时间变化的血细胞计数波动模式.88例BRCA1携带者和75例BRCA2携带者与226例和242例野生型患者相匹配,分别。BRCA1携带者或BRCA2携带者与匹配的野生型患者在化疗期间经历任何3/4级或3/4级血细胞减少的比例和时间没有显着差异。需要治疗修改的比例和第一次修改的时间也相似。突变携带者的血细胞计数随时间的波动模式反映了总体上和最常见的治疗方案中野生型患者的情况。在BRCA1或BRCA2中具有遗传突变的女性经历相似的频率,严重程度,与匹配的野生型患者一样,根治性乳腺癌化疗期间的血液学毒性时间。我们的发现表明,BRCA1或BRCA2单倍功能不足足以满足短期重复性造血应激源的骨髓储备。
    Women who inherit a BRCA1 or BRCA2 mutation have an increased risk of breast cancer. Preliminary evidence suggests they may also have defects in bone marrow function. To test this hypothesis, we conducted a multicenter, retrospective, matched cohort study, comparing women with localized breast cancer requiring cytotoxic chemotherapy who carried an inherited BRCA1 or BRCA2 mutation to similar wild-type patients treated between 1995 and 2017 and matched based on age, race, site, and chemotherapy regimen. The proportion who developed specific hematologic toxicities, timing of these toxicities, and patterns of blood count fluctuations over time were compared among BRCA1 carriers vs matched wild-type patients and among BRCA2 carriers vs matched wild-type patients. 88 BRCA1 carriers and 75 BRCA2 carriers were matched to 226 and 242 wild-type patients, respectively. The proportions and timing of experiencing any grade or grade 3/4 cytopenias during chemotherapy were not significantly different for BRCA1 carriers or BRCA2 carriers vs matched wild-type patients. Proportions requiring treatment modifications and time to first modification were also similar. Patterns of blood count fluctuations over time in mutation carriers mirrored those in wild-type patients overall and by the most common regimens. Women with an inherited mutation in BRCA1 or BRCA2 experience similar frequency, severity, and timing of hematologic toxicities during curative intent breast cancer chemotherapy as matched wild-type patients. Our findings suggest that BRCA1 or BRCA2 haploinsufficiency is sufficient for adequate bone marrow reserve in the face of short-term repetitive hematopoietic stressors.
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  • 文章类型: Journal Article
    Aging is accompanied by impairment in the nervous, immune, and endocrine systems as well as in neuroimmunoendocrine communication. In this context, there is an age-related alteration of the physiological response to acute stress, which is modulated by catecholamine (CA), final products of the sympathetic-adreno-medullary axis. The involvement of CA in essential functions of the nervous system is consistent with the neuropsychological deficits found in mice with haploinsufficiency (hemizygous; HZ) of tyrosine hydroxylase (TH) enzyme (TH-HZ). However, other possible alterations in regulatory systems have not been studied in these animals. The aim of the present work was to analyze whether adult TH-HZ female mice presented the impairment of behavioral traits and immunological responses that occurs with aging and whether they had affected their mean lifespan. ICR-CD1 female TH-HZ and wild type (WT) mice were used in a longitudinal study. Behavioral tests were performed on adult and old mice in order to evaluate their sensorimotor abilities and exploratory capacity, as well as anxiety-like behaviors. At the ages of 2 ± 1, 4 ± 1, 9 ± 1, 13 ± 1 and 20 ± 1 months, peritoneal leukocytes were extracted and several immune functions were assessed (phagocytic capacity, Natural Killer (NK) cytotoxicity, and lymphoproliferative response to lipopolysaccharide (LPS) and concanavalin A (ConA)). In addition, several oxidative stress parameters (catalase, glutathione reductase and glutathione peroxidase activities, and reduced glutathione (GSH) concentrations as antioxidant compounds as well as xanthine oxidase activity, oxidized glutathione (GSSG) concentrations, and GSSG/GSH ratio as oxidants) were analyzed. As inflammatory stress parameters TNF-alpha and IL-10 concentrations, and TNF-alpha/IL-10 ratios as inflammatory/anti-inflammatory markers, were measured. Animals were maintained in standard conditions until their natural death. The results indicate that adult TH-HZ mice presented worse sensorimotor abilities and exploratory capacity than their WT littermates as well as greater anxiety-like behaviors. With regards to the immune system, adult TH-HZ animals exhibited lower values of phagocytic capacity, NK cytotoxicity, and lymphoproliferative response to LPS and ConA than WT mice. Moreover, immune cells of TH-HZ mice showed higher oxidative and inflammatory stress than those of WT animals. Although these differences between TH-HZ and WT, in general, decreased with aging, this premature immunosenescence and impairment of behavior of TH-HZ mice was accompanied by a shorter mean lifespan in comparison to WT counterparts. In conclusion, haploinsufficiency of th gene in female mice appears to provoke premature aging of the regulatory systems affecting mean lifespan.
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  • 文章类型: Journal Article
    背景:Filaggrin基因(FLG)表达,特别是在皮肤上,与皮肤屏障的发展有关,并与湿疹风险有关。然而,缺乏关于脐带血(UCB)中FLG表达是否与湿疹发展相关的知识和预测。
    目的:本研究旨在评估UCB中FLG的表达是否与婴儿期湿疹的发展相关,并对其进行预测。
    方法:纳入出生队列研究的婴儿(n=94)在3、6和12个月时进行湿疹评估。可从全基因组基因表达谱分析获得测量UCB中FLG转录本表达的五个探针。FLG遗传变异R501X,对2282del4和S3247X进行基因分型。使用具有稳健方差估计的泊松回归评估关联。曲线下面积(AUC),描述拟合模型的判别/预测性能,是从逻辑回归估计的。
    结果:通过探针A_24_P51322测量的FLG表达水平升高与生命第一年湿疹风险降低相关(RR=0.60,95%CI:0.38-0.95)。相比之下,通过探针A_21_P0014075测量的FLG反义转录本水平升高与湿疹风险增加相关(RR=2.02,95%CI:1.10-3.72)。在包括FLG表达的预测模型中,FLG遗传变异,和性,在3月龄时将患和不患湿疹的儿童之间的歧视很高(AUC:0.91,95%CI:0.84-0.98).
    结论:这项研究表明,第一次,UCB中FLG的表达与婴儿期湿疹的发展有关。此外,我们的分析提供了能够区分的预测模型,在很大程度上,在婴儿期会和不会发展湿疹的人之间。因此,早期发现患湿疹风险增加的婴儿是可能的,此类高危新生儿可从早期分层和干预中获益.
    BACKGROUND: Filaggrin gene (FLG) expression, particularly in the skin, has been linked to the development of the skin barrier and is associated with eczema risk. However, knowledge as to whether FLG expression in umbilical cord blood (UCB) is associated with eczema development and prediction is lacking.
    OBJECTIVE: This study sought to assess whether FLG expression in UCB associates with and predicts the development of eczema in infancy.
    METHODS: Infants enrolled in a birth cohort study (n=94) were assessed for eczema at ages 3, 6, and 12 months. Five probes measuring FLG transcripts expression in UCB were available from genomewide gene expression profiling. FLG genetic variants R501X, 2282del4, and S3247X were genotyped. Associations were assessed using Poisson regression with robust variance estimation. Area under the curve (AUC), describing the discriminatory/predictive performance of fitted models, was estimated from logistic regression.
    RESULTS: Increased level of FLG expression measured by probe A_24_P51322 was associated with reduced risk of eczema during the first year of life (RR=0.60, 95% CI: 0.38-0.95). In contrast, increased level of FLG antisense transcripts measured by probe A_21_P0014075 was associated with increased risk of eczema (RR=2.02, 95% CI: 1.10-3.72). In prediction models including FLG expression, FLG genetic variants, and sex, discrimination between children who will and will not develop eczema at 3 months of age was high (AUC: 0.91, 95% CI: 0.84-0.98).
    CONCLUSIONS: This study demonstrated, for the first time, that FLG expression in UCB is associated with eczema development in infancy. Moreover, our analysis provided prediction models that were capable of discriminating, to a great extent, between those who will and will not develop eczema in infancy. Therefore, early identification of infants at increased risk of developing eczema is possible and such high-risk newborns may benefit from early stratification and intervention.
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  • 文章类型: Journal Article
    Mowat-Wilson综合征(MWS)是一种以独特的面部特征为特征的遗传性疾病,中度至重度智力残疾,先天性畸形,包括先天性巨结肠病,生殖器和眼睛异常,先天性心脏缺陷,由ZEB2基因的单倍体不足引起。迄今为止,尚未定义MWS中大脑形态异常的特征性模式。
    通过脑磁共振成像(MRI)分析,我们描绘了54例MWS患者的神经影像学表型,证实了ZEB2缺陷,将其与对已发表病例的彻底审查中确定的特征进行比较,并评估基因型-表型相关性。
    96%的患者有异常的MRI结果。最常见的特征是call体异常(占病例的79.6%),海马异常(77.8%),脑室扩大(68.5%),和白质异常(厚度减少40.7%,局部信号改变22.2%)。其他一致的发现是大基底神经节,皮质,和小脑畸形.大多数特征在文献中代表性不足。我们还发现ZEB2变异导致合成缺陷蛋白有利于精神运动发育和某些癫痫特征,但也与call体发育不全有关。
    这项研究描绘了MWS中大脑异常的频谱,并为ZEB2在神经发育中的作用提供了新的见解。GenetMed提前在线出版2016年11月10日。
    Mowat-Wilson syndrome (MWS) is a genetic disease characterized by distinctive facial features, moderate to severe intellectual disability, and congenital malformations, including Hirschsprung disease, genital and eye anomalies, and congenital heart defects, caused by haploinsufficiency of the ZEB2 gene. To date, no characteristic pattern of brain dysmorphology in MWS has been defined.
    Through brain magnetic resonance imaging (MRI) analysis, we delineated a neuroimaging phenotype in 54 MWS patients with a proven ZEB2 defect, compared it with the features identified in a thorough review of published cases, and evaluated genotype-phenotype correlations.
    Ninety-six percent of patients had abnormal MRI results. The most common features were anomalies of corpus callosum (79.6% of cases), hippocampal abnormalities (77.8%), enlargement of cerebral ventricles (68.5%), and white matter abnormalities (reduction of thickness 40.7%, localized signal alterations 22.2%). Other consistent findings were large basal ganglia, cortical, and cerebellar malformations. Most features were underrepresented in the literature. We also found ZEB2 variations leading to synthesis of a defective protein to be favorable for psychomotor development and some epilepsy features but also associated with corpus callosum agenesis.
    This study delineated the spectrum of brain anomalies in MWS and provided new insights into the role of ZEB2 in neurodevelopment.Genet Med advance online publication 10 November 2016.
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  • 文章类型: Journal Article
    自闭症谱系障碍影响着全世界数百万人,但是它们的异质性使治疗干预复杂化,这本质上是有症状的。在数百种治疗选择中进行合理筛选的通用且相关的模型将有助于改善临床实践。在这里,我们研究了从多能干细胞分化的神经元是否可以使用SHANK3单倍体不足作为原理证明提供这样的工具。筛选化合物文库以发现增加从对照人胚胎干细胞分化的神经元中SHANK3mRNA含量的潜力。利用诱导多能干细胞技术,然后评估活性化合物在纠正分化自SHANK3有害点突变个体的神经元功能失调网络方面的功效.在测试的202种化合物中,锂和丙戊酸在校正的SHANK3单倍体功能不全相关表型时显示出最佳疗效。随后向一名患者提供了锂药物治疗,一年后,观察到自闭症严重程度令人鼓舞地下降。这表明多能干细胞衍生的神经元提供了一种新的细胞范例,可用于寻找特定的疾病修饰治疗。
    Autism spectrum disorders affect millions of individuals worldwide, but their heterogeneity complicates therapeutic intervention that is essentially symptomatic. A versatile yet relevant model to rationally screen among hundreds of therapeutic options would help improving clinical practice. Here we investigated whether neurons differentiated from pluripotent stem cells can provide such a tool using SHANK3 haploinsufficiency as a proof of principle. A library of compounds was screened for potential to increase SHANK3 mRNA content in neurons differentiated from control human embryonic stem cells. Using induced pluripotent stem cell technology, active compounds were then evaluated for efficacy in correcting dysfunctional networks of neurons differentiated from individuals with deleterious point mutations of SHANK3. Among 202 compounds tested, lithium and valproic acid showed the best efficacy at corrected SHANK3 haploinsufficiency associated phenotypes in cellulo. Lithium pharmacotherapy was subsequently provided to one patient and, after one year, an encouraging decrease in autism severity was observed. This demonstrated that pluripotent stem cell-derived neurons provide a novel cellular paradigm exploitable in the search for specific disease-modifying treatments.
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  • 文章类型: Journal Article
    Sortilin相关受体1(SORL1)基因与阿尔茨海默病(AD)的风险增加有关。SORL1基因中的罕见遗传变异也与常染色体显性遗传早发性AD(EOAD)有关。在这里,我们报告了欧洲EOAD队列中SORL1遗传变异对EOAD的贡献的大规模调查。在欧洲早发痴呆(EOD)联盟的背景下,我们对1255名EOAD患者和1938名年龄和起源匹配的对照个体中的SORL1全编码区进行了大规模的基于扩增子的平行测序,源自比利时,西班牙,葡萄牙,意大利,瑞典,德国,捷克共和国。我们确定了仅存在于患者中的六个移码变体和两个无义变体。预计这些突变会通过无义介导的mRNA衰变导致单倍体不足,在比利时EOAD患者中观察到的SORL1p.Gly447Argfs*22可以通过实验证实。我们观察到患者中罕见的非同义变异的1.5倍富集(携带者频率为8.8%;SkatOMetap值0.0001)。在整个患者/对照组中检测到的84种非同义罕见变异中,36只在患者中检测到。我们的发现强调了罕见的SORL1变体在EOAD中的作用,而且在健康个体中也显示出这些变异的不可忽视的频率,需要进行致病性测定。由于移码和无意义变体,过早停止密码子,到目前为止,只在病人身上发现,其预测的作用方式与SORL1在AD中的体外功能研究的证据相对应。
    The sortilin-related receptor 1 (SORL1) gene has been associated with increased risk for Alzheimer\'s disease (AD). Rare genetic variants in the SORL1 gene have also been implicated in autosomal dominant early-onset AD (EOAD). Here we report a large-scale investigation of the contribution of genetic variability in SORL1 to EOAD in a European EOAD cohort. We performed massive parallel amplicon-based re-sequencing of the full coding region of SORL1 in 1255 EOAD patients and 1938 age- and origin-matched control individuals in the context of the European Early-Onset Dementia (EOD) consortium, originating from Belgium, Spain, Portugal, Italy, Sweden, Germany, and Czech Republic. We identified six frameshift variants and two nonsense variants that were exclusively present in patients. These mutations are predicted to result in haploinsufficiency through nonsense-mediated mRNA decay, which could be confirmed experimentally for SORL1 p.Gly447Argfs*22 observed in a Belgian EOAD patient. We observed a 1.5-fold enrichment of rare non-synonymous variants in patients (carrier frequency 8.8 %; SkatOMeta p value 0.0001). Of the 84 non-synonymous rare variants detected in the full patient/control cohort, 36 were only detected in patients. Our findings underscore a role of rare SORL1 variants in EOAD, but also show a non-negligible frequency of these variants in healthy individuals, necessitating the need for pathogenicity assays. Premature stop codons due to frameshift and nonsense variants, have so far exclusively been found in patients, and their predicted mode of action corresponds with evidence from in vitro functional studies of SORL1 in AD.
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