Genetic Background

遗传背景
  • 文章类型: Journal Article
    乳脂组成是乳品工业的重要性状,因为它直接影响乳和其他乳制品的营养和技术特性。乳脂的合成是由基因网络调控的复杂过程。因此,了解乳脂合成调控的遗传变异和分子机制将有助于提高乳制品的营养品质。在这次审查中,我们提供了牛乳脂合成的概述以及参与该途径的候选基因。我们还讨论了脂肪酸的从头合成(ACSS,ACACA,FASN),FAs的摄取(FATP,FAT,LPL),FAs的细胞内激活和通道(ACSL,FABP),伸长率(EVOLV6),去饱和(SCD,FADS),甘油三酯的形成(GPAM,AGPAT,LIPIN,DGAT),和乳脂分泌(BTN1A1,XDH,PLIN2).单个脂肪酸的遗传变异性将有助于开发选择策略,以获得更健康的牛乳脂肪谱。因此,这篇综述将提供对调节牛乳脂肪合成的分子机制的潜在理解。
    Milk fat composition is an important trait for the dairy industry as it directly influences the nutritional and technological properties of milk and other dairy products. The synthesis of milk fat is a complex process regulated by a network of genes. Thus, understanding the genetic variation and molecular mechanisms regulating milk fat synthesis will help to improve the nutritional quality of dairy products. In this review, we provide an overview of milk fat synthesis in bovines along with the candidate genes involved in the pathway. We also discuss de novo synthesis of fatty acids (ACSS, ACACA, FASN), uptake of FAs (FATP, FAT, LPL), intracellular activation and channelling of FAs (ACSL, FABP), elongation (EVOLV6), desaturation (SCD, FADS), formation of triglycerides (GPAM, AGPAT, LIPIN, DGAT), and milk lipid secretion (BTN1A1, XDH, PLIN2). The genetic variability of individual fatty acids will help to develop selection strategies for obtaining a healthier milk fat profile in bovines. Thus, this review will offer a potential understanding of the molecular mechanisms that regulate milk fat synthesis in bovines.
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  • 文章类型: Systematic Review
    目的:生殖功能是环境因素与每个个体的遗传足迹之间的相互作用。遗传分析的发展加强了其在女性生殖障碍调查中的作用,潜在的治疗方案和提供个性化护理。尽管基因检测的要求越来越高,基因-疾病关系(GDR)的证据有限.我们进行了一项系统评价,探讨了最常见的女性生殖内分泌失调与不孕相关的关系[包括多囊卵巢综合征(PCOS),卵巢早衰(POI)和低促性腺激素性性腺功能减退症]及其遗传背景,以总结当前知识。
    方法:根据PRISMA指南对相关文献进行系统综述,直至2022年7月。使用的数据源是PubMed和Embase。
    结果:从原始搜索中确定的614篇文章中纳入了总共55项研究。我们鉴定了384个与一种或多种所包括的女性生殖障碍相关的基因。发现与POI相关的基因数量最高(N=209),其次是低促性腺激素性性腺功能减退症(N=88)和PCOS(N=87)。四个基因,包括FSHR,LHβ,LEPR和SF1与多种生殖疾病有关,这表明这些疾病的发展是共同的途径。
    结论:我们提供了与三种女性生殖疾病相关的当前已知基因的最新摘要(PCOS,POI和低促性腺激素性性腺功能减退)。遗传分析在女性生殖受损领域的作用可能在女性生殖障碍的诊断和个性化患者护理中发挥作用。
    Reproductive function is the interplay between environmental factors and the genetic footprint of each individual. The development in genetic analysis has strengthened its role in the investigation of female reproductive disorders, potential treatment options and provision of personalized care. Despite the increasing requirement of genetic testing, the evidence of the gene-disease relationships (GDR) is limited. We performed a systematic review exploring the associations between the most frequent female reproductive endocrine disorders associated with subfertility [including polycystic ovaries syndrome (PCOS), premature ovarian failure (POI) and hypogonadotropic hypogonadism] and their genetic background in order to summarize current knowledge.
    A systematic review of relevant literature in accordance with PRISMA guidelines was conducted until July 2022. Data sources that were used are PubMed and Embase.
    A total of 55 studies were included from the 614 articles identified in the original search. We identified 384 genes associated with one or more of the included female reproductive disorders. The highest number of genes was found to be associated with POI ( N  = 209), followed by hypogonadotropic hypogonadism ( N  = 88) and PCOS ( N  = 87). Four genes, including FSHR , LHβ , LEPR and SF1 were associated with multiple reproductive disorders implying common pathways in the development of those diseases.
    We provide an up-to-date summary of the currently known genes that are associated with three female reproductive disorders (PCOS, POI and hypogonadotropic hypogonadism). The role of genetic analysis in the field of impaired female reproduction may have a role in the diagnosis of female reproductive disorders and personalized patient care.
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  • 文章类型: Journal Article
    减数分裂重组是遗传变异的主要来源之一,性真核生物进化适应的一个基本因素。然而,变异在重组率和其他重组特征中的作用仍未得到充分研究。在这次审查中,我们关注重组率对不同外在和内在因素的敏感性。我们简要介绍了响应环境扰动和/或不良遗传背景的重组可塑性的经验证据,并讨论了为解释这种可塑性如何演变以及如何影响重要种群特征而开发的理论模型。我们强调了证据之间的差距,主要来自二倍体的实验,和理论,通常假定单倍体选择。最后,我们提出了开放的问题,这些问题的解决将有助于概述有利于重组可塑性的条件。这将有助于回答长期存在的问题,即为什么性重组存在,尽管它的成本,因为即使在拒绝任何非零恒定重组的选择方案中,塑性重组也可能是进化有利的。
    Meiotic recombination is one of the main sources of genetic variation, a fundamental factor in the evolutionary adaptation of sexual eukaryotes. Yet, the role of variation in recombination rate and other recombination features remains underexplored. In this review, we focus on the sensitivity of recombination rates to different extrinsic and intrinsic factors. We briefly present the empirical evidence for recombination plasticity in response to environmental perturbations and/or poor genetic background and discuss theoretical models developed to explain how such plasticity could have evolved and how it can affect important population characteristics. We highlight a gap between the evidence, which comes mostly from experiments with diploids, and theory, which typically assumes haploid selection. Finally, we formulate open questions whose solving would help to outline conditions favoring recombination plasticity. This will contribute to answering the long-standing question of why sexual recombination exists despite its costs, since plastic recombination may be evolutionary advantageous even in selection regimes rejecting any non-zero constant recombination.
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  • 文章类型: Journal Article
    未经证实:尽管性别作为免疫景观的关键生物学变量具有无可争议的相关性,我们对性别偏倚性免疫反应从而调节癌症患者治疗结果的基本机制的理解仍然有限。这种障碍推迟了破译癌症异质性及其免疫监视的实际尝试,进一步偏离了在当前免疫疗法驱动的情况下预测性生物标志物的实现。正文:本综述简要报道了遗传,染色体,荷尔蒙,以及对免疫检查点抑制剂(ICI)的反应中潜在的性别差异的免疫特征。除了概述ICI药物动力学/动力学的可靠数据的需求外,我们的调查可能为ICI疗效的性别决定因素提供了新的见解,并提出了需要前瞻性研究的未发现途径.
    未经评估:根据可共享的视图,我们建议在评估癌症患者对ICI的临床反应时,将性别广泛纳入协变量.
    UNASSIGNED: In spite of the undisputed relevance of sex as critical biologic variable of the immune landscape, still limited is our understanding of the basic mechanisms implicated in sex-biased immune response thereby conditioning the therapeutic outcome in cancer patients. This hindrance delays the actual attempts to decipher the heterogeneity of cancer and its immune surveillance, further digressing the achievement of predictive biomarkers in the current immunotherapy-driven scenario. Body: The present review concisely reports on genetic, chromosomal, hormonal, and immune features underlying sex-differences in the response to immune checkpoint inhibitors (ICIs). In addition to outline the need of robust data on ICI pharmaco-kinetics/dynamics, our survey might provide new insights on sex determinants of ICI efficacy and suggests uncovered pathways that warrant prospective investigations.
    UNASSIGNED: According to a sharable view, we propose to widely include sex among the co-variates when assessing the clinical response to ICI in cancer patients.
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  • 文章类型: Case Reports
    家族性部分脂肪营养不良(FPLD)是一种罕见的遗传性疾病,其特征是脂肪组织的选择性丢失。其估计患病率低至百万分之一。代谢活跃的脂肪组织的缺乏与广泛的代谢并发症密切相关。比如胰岛素抵抗,脂肪萎缩性糖尿病,血脂异常与严重的高甘油三酯血症,高血压或肝脂肪变性。此外,女性患者经常发展高雄激素血症,多毛症,多囊卵巢和不孕症。最常见的两种类型是FPLD类型2和3。LMNA和PPARG基因内的变异占所有报道的FPLD病例的50%以上。由于其高度异质性和稀有性,脂肪营养不良很容易被识别或误诊。为了确定有症状的女性及其近亲的FPLD的遗传背景,使用NGS定制组对LMNA和PPARG基因进行测序。受影响的患者面部出现脂肪沉积,脖子和躯干,脂肪减少,下肢肌肉肥大和多毛症,所有的特征首先表现在青春期。她的临床表现包括代谢紊乱,包括高胆固醇血症和严重的高甘油三酯血症,糖尿病和肝性脂肪变性。这与她典型的脂肪分布和身体特征一起引起了对FPLD的怀疑。NGS分析显示PPARG基因外显子4中存在错义杂合变异c.443G>A,使甘氨酸在氨基酸位置148,p.(Gly148Glu)取代为谷氨酸。在患者的母亲和儿子中也发现了该变体。该变体以前未在任何公共数据库中报告。基于计算分析,PPARγDNA结合结构域内的关键变体定位,现有的文献数据和患者家庭中的变异共隔离,小说c.443G>一个变异被怀疑是致病的。需要进行功能测试以确认新变体的致病性。遗传性脂肪营养不良综合征代表一组异质性代谢紊乱,其背景往往仍不清楚。更好地低估遗传基础将允许早期诊断和有针对性的治疗实施。
    Familial partial lipodystrophy (FPLD) is a rare genetic disorder characterized by the selective loss of adipose tissue. Its estimated prevalence is as low as 1 in 1 million. The deficiency of metabolically active adipose tissue is closely linked with a wide range of metabolic complications, such as insulin resistance, lipoatrophic diabetes, dyslipidemia with severe hypertriglyceridemia, hypertension or hepatic steatosis. Moreover, female patients often develop hyperandrogenism, hirsutism, polycystic ovaries and infertility. The two most common types are FPLD type 2 and 3. Variants within LMNA and PPARG genes account for more than 50% of all reported FPLD cases. Because of its high heterogeneity and rarity, lipodystrophy can be easily unrecognized or misdiagnosed. To determine the genetic background of FPLD in a symptomatic woman and her close family, an NGS custom panel was used to sequence LMNA and PPARG genes. The affected patient presented fat deposits in the face, neck and trunk, with fat loss combined with muscular hypertrophy in the lower extremities and hirsutism, all features first manifesting at puberty. Her clinical presentation included metabolic disturbances, including hypercholesterolemia with severe hypertriglyceridemia, diabetes mellitus and hepatic steatosis. This together with her typical fat distribution and physical features raised a suspicion of FPLD. NGS analysis revealed the presence of missense heterozygous variant c.443G>A in exon 4 of PPARG gene, causing glycine to glutamic acid substitution at amino acid position 148, p.(Gly148Glu). The variant was also found in the patient’s mother and son. The variant was not previously reported in any public database. Based on computational analysis, crucial variant localization within DNA-binding domain of PPARγ, available literature data and the variant cosegregation in the patient’s family, novel c.443G>A variant was suspected to be causative. Functional testing is needed to confirm the pathogenicity of the novel variant. Inherited lipodystrophy syndromes represent a heterogenous group of metabolic disorders, whose background often remains unclear. A better understating of the genetic basis would allow earlier diagnosis and targeted treatment implementation.
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  • 文章类型: Journal Article
    背景:关于儿童硬化性苔藓的研究有限,and,到目前为止,没有研究比较男孩和女孩的硬化性苔藓的病程。我们试图检查所有关于患有硬化性苔藓的男孩和女孩的出版物,并评估和比较流行病学,症状和体征,遗传背景,危险因素,治疗,和预后。
    方法:在Embase中进行了系统搜索,Medline,科克伦,和WebofScience数据库。纳入标准是有关0-18岁儿童的信息,以及临床或组织学诊断为硬化性苔藓。回顾了1985年至2021年的文献。
    结果:检索到1780篇文章,其中90篇文章有资格列入。男孩和女孩在许多方面表现相似;尽管如此,治疗和随访方法不同。
    结论:尽管临床方法通常不同,男孩和女孩的硬化性苔藓表现出许多相似之处。需要更多的研究,特别是在后续行动中,更好地了解硬化性苔藓的病程,并建立先进的儿童管理计划。
    BACKGROUND: Studies concerning pediatric lichen sclerosus are limited, and, to date, there have been no studies comparing the course of lichen sclerosus in boys and girls. We sought to examine all publications on boys and girls with lichen sclerosus and assess and compare epidemiology, symptoms and signs, genetic background, risk factors, treatment, and prognosis.
    METHODS: A systematic search was performed in the Embase, Medline, Cochrane, and Web of Science databases. Inclusion criteria were information on children ages 0-18 years and a clinical or histologic diagnosis of lichen sclerosus. Literature from 1985 to 2021 was reviewed.
    RESULTS: A total of 1780 articles were retrieved from the search, of which 90 articles were eligible for inclusion. Boys and girls present similarly on many aspects; nonetheless, treatment and follow-up are approached differently.
    CONCLUSIONS: Though the clinical approach is often different, lichen sclerosus in boys and girls demonstrates many similarities. More research is needed, especially on follow-up, to gain a better understanding of the course of lichen sclerosus and establish an advanced management plan for children.
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  • 文章类型: Case Reports
    Klippel-Feil综合征(KFS)是形成颈椎的罕见先天性异常,导致两个或多个椎骨融合。KFS与许多先天性异常有关,其中一些是常见和众所周知的。这里,我们报告了一名儿童,KFS与完全位倒位(SIT)极为罕见。KFS和SIT都是遗传异质性的,它们的共同出现表明共享相同的潜在致病因子的可能性很高。这里,我们回顾了文献中已知的这两种情况的遗传背景。
    Klippel-Feil syndrome (KFS) is a rare congenital anomaly in forming the cervical vertebrae resulting in the fusion of two or more of the vertebrae. KFS is associated with many congenital anomalies, some of which are common and well known. Here, we report a child with an extremely rare association of KFS with situs inversus totalis (SIT). Both KFS and SIT are genetically heterogeneous and their co-occurrence suggests a high possibility of sharing the same underlying causative agent. Here, we review the genetic background that is known for these two conditions in the literature.
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  • 文章类型: Journal Article
    BACKGROUND: Left ventricular non-compaction has been increasingly diagnosed in recent years. However, it is still debated whether non-compaction is a pathological condition or a physiological trait. In this meta-analysis and systematic review, we compare studies, which investigated these two different perspectives. Furthermore, we provide a comprehensive overview on the clinical outcome as well as genetic background of left ventricular non-compaction cardiomyopathy in adult patients.
    RESULTS: We retrieved PubMed/Medline literatures in English language from 2000 to 19/09/2018 on clinical outcome and genotype of patients with non-compaction. We summarized and extensively reviewed all studies that passed selection criteria and performed a meta-analysis on key phenotypic parameters. Altogether, 35 studies with 2271 non-compaction patients were included in our meta-analysis. The mean age at diagnosis was the mid of their fifth decade. Two-thirds of patients were male. Congenital heart diseases including atrial or ventricular septum defect or Ebstein anomaly were reported in 7% of patients. Twenty-four percent presented with family history of cardiomyopathy. The mean frequency of neuromuscular diseases was 5%. Heart rhythm abnormalities were reported frequently: conduction disease in 26%, supraventricular tachycardia in 17%, and sustained or non-sustained ventricular tachycardia in 18% of patients. Three important outcome measures were reported including systemic thromboembolic events with a mean frequency of 9%, heart transplantation with 4%, and adequate ICD therapy with 15%. Nine studies investigated the genetics of non-compaction cardiomyopathy. The most frequently mutated gene was TTN with a pooled frequency of 11%. The average frequency of MYH7 mutations was 9%, for MYBPC3 mutations 5%, and for CASQ2 and LDB3 3% each. TPM1, MIB1, ACTC1, and LMNA mutations had an average frequency of 2% each. Mutations in PLN, HCN4, TAZ, DTNA, TNNT2, and RBM20 were reported with a frequency of 1% each. We also summarized the results of eight studies investigating the non-compaction in altogether 5327 athletes, pregnant women, patients with sickle cell disease, as well as individuals from population-based cohorts, in which the presence of left ventricular hypertrabeculation ranged from 1.3 to 37%.
    CONCLUSIONS: The summarized data indicate that non-compaction may lead to unfavorable outcome in different cardiomyopathy entities. The presence of key features in a multimodal diagnostic approach could distinguish between benign morphological trait and manifest cardiomyopathy.
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  • 文章类型: Journal Article
    OBJECTIVE: To summarize the latest information on the relationship between genes and common forms of obesity, and to review genetic markers (SNPs and miRNA) that play a role in predisposing to common forms of obesity and related disorders.
    METHODS: We searched PubMed with the following keywords: (obesity[Title/Abstract]) AND predisposition[Title/Abstract]) AND miRNA[Title/Abstract]) OR polymorphism[Title/Abstract].
    RESULTS: From the search we obtained a total of 44 gene loci and 48 miRNAs associated with common obesity.
    CONCLUSIONS: It is now widely accepted that obesity involves interactions between environmental risk factors (physical inactivity, excessive calorie intake, chronic stress, taste perception) and a genetic background of risk. Analysis of the genetic background of obese subjects is therefore an important way to determine the molecular mechanisms controlling the link between food intake and obesity, enabling a better understanding of how these interactions may differ from person to person.
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  • 文章类型: Journal Article
    BACKGROUND: Heritage is the most important risk factor for breast cancer. About 15-20% of breast cancer is familial, referring to affected women who have one or more first- or second-degree relatives with the disease. The heritable component in these families is substantial, especially in families with aggregation of breast cancer with low age at onset. Identifying breast cancer susceptibility genes: Since the discovery of the highly penetrant autosomal dominant susceptibility genes BRCA1 and BRCA2 in the 1990s, several more breast cancer genes that confer a moderate to high risk of breast cancer have been identified. Furthermore, during the last decade, advances in genomic technologies have led to large scale genotyping in genome-wide association studies that have identified a considerable amount of common low penetrance loci. In total, the high risk genes, BRCA1, BRCA2, TP53, STK11, CD1 and PTEN account for approximately 20% of the familial risk. Moderate risk variants account for up to 5% of the inherited familial risk. The more than 180 identified low-risk loci explain 18% of the familial risk. Altogether more than half of the genetic background in familial breast cancer remains unclear. Other genes and low risk loci that explain a part the remaining fraction will probably be identified. Clinical aspects and future perspectives: Definitive clinical recommendations can be drawn only for carriers of germline variants in a limited number of high and moderate risk genes for which an association with breast cancer has been established. Future progress in evaluating previously identified breast cancer candidate variants and low risk loci as well as exploring new ones can play an important role in improving individual risk prediction in familial breast cancer.
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