Estrogen Receptor alpha

雌激素受体 α
  • 文章类型: Journal Article
    背景:股骨头坏死(ONFH)是一种高致残率的疾病,遗传因素与其发病机制密切相关。本研究旨在探讨ESR1和APOE基因多态性与ONFH发病风险的相关性。
    方法:在本病例对照研究中,三种遗传变异之间的潜在关联(rs2982573C结果:总体分析表明,ESR1基因中的rs93223232与纯合子下的ONFH风险降低相关(AA与CC:OR=0.69,95%CI[0.53-0.90],p=0.006),占优势(CA+AAvs.CC:OR=0.70,95%CI[0.54-0.90],p=0.006),和添加剂(OR=0.79,95%CI[0.66-0.95],p=0.013)型号。分层分析显示,rs93223232与以51岁以上和不吸烟者为特征的亚组的ONFH风险较低有关。然而,ESR1rs2982573和rs10872678以及APOErs7259620和rs769446与ONFH的风险之间没有发现显著的相关性。
    结论:ESR1-rs93223232与ONFH的风险降低密切相关,从而增强我们对基因多态性与ONFH之间关系的理解。
    BACKGROUND: Osteonecrosis of the femoral head (ONFH) is a disease with a high disability rate, and genetic factors are closely related to its pathogenesis. This study aimed to investigate the possible correlation between ESR1 and APOE gene polymorphisms and the risk of ONFH.
    METHODS: In this case-control study, the potential association between three genetic variants (rs2982573 C < T, rs10872678 C < T, and rs9322332 A < C) of the ESR1 gene and two genetic variants (rs7259620 A < G and rs769446 C < T) of the APOE gene with the risk of ONFH was investigated. Correlations between gene polymorphisms and ONFH risk were assessed using logistic regression analysis, with calculation of odds ratios (ORs) and 95% confidence intervals (CIs).
    RESULTS: The overall analysis demonstrated that rs9322332 in the ESR1 gene exhibited a correlation with a decreased risk of ONFH under the homozygous (AA vs.CC: OR = 0.69, 95% CI [0.53-0.90], p = 0.006), dominant (CA + AA vs. CC: OR = 0.70, 95% CI [0.54-0.90], p = 0.006), and additive (OR = 0.79, 95% CI [0.66-0.95], p = 0.013) models. The stratification analysis revealed that rs9322332 was linked to a lower risk of ONFH in subgroups characterized by individuals aged over 51 years and non-smokers. Nevertheless, there were no notable correlations found between ESR1 rs2982573 and rs10872678, as well as APOE rs7259620 and rs769446, with the risk of ONFH.
    CONCLUSIONS: ESR1-rs9322332 is closely linked to a decreased risk of ONFH, thereby enhancing our understanding of the relationship between gene polymorphisms and ONFH.
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  • 文章类型: Journal Article
    微囊藻毒素-亮氨酸-精氨酸(MC-LR)与人类多种癌症呈正相关。然而,MC-LR与前列腺癌风险和预后之间的关联尚未在流行病学研究中进行.没有报道的研究通过进行实验研究将MC-LR暴露与前列腺癌的不良预后联系起来。在南京的超市和超市中,大多数水产食品中都检测到MC-LR的含量,对消费者构成健康风险。前列腺癌组织和血清中的MC-LR水平均明显高于对照组。在整个受试者中,通过血清MC-LR对前列腺癌风险的校正比值比(OR)为1.75(95CI:1.21-2.52),MC-LR与晚期肿瘤分期呈正相关。生存曲线分析表明,组织中MC-LR水平较高的患者总生存期较差。人类,动物,细胞研究证实MC-LR暴露可增加前列腺癌中雌激素受体-α(ERα)的表达并促进上皮-间质转化(EMT)。此外,MC-LR诱导的E-钙粘蛋白水平降低,增加波形蛋白水平,ERα敲低后,前列腺癌细胞的迁移和侵袭能力的增加被显著抑制。ERα敲低可有效缓解MC-LR诱导的BALB/c裸鼠移植瘤生长和肺转移。我们的数据表明,MC-LR通过激活ERα上调波形蛋白和下调E-cadherin,促进前列腺癌细胞的迁移和侵袭。我们的发现强调了MC-LR在前列腺癌中的作用,为了解MC-LR诱导的前列腺毒性提供了新的视角。
    Microcystin-leucine-arginine (MC-LR) is positively linked with multiple cancers in humans. However, the association between MC-LR and the risk and prognosis of prostate cancer has not been conducted in epidemiological studies. No reported studies have linked MC-LR exposure to the poor prognosis of prostate cancer by conducting experimental studies. The content of MC-LR was detected in most of the aquatic food in wet markets and supermarkets in Nanjing and posed a health risk for consumers. MC-LR levels in both prostate cancer tissues and serum were significantly higher than controls. The adjusted odds ratio (OR) for prostate cancer risk by serum MC-LR was 1.75 (95%CI: 1.21-2.52) in the whole subjects, and a positive correlation between MC-LR and advanced tumor stage was observed. Survival curve analysis indicated patients with higher MC-LR levels in tissues exhibited poorer overall survival. Human, animal, and cell studies confirmed that MC-LR exposure increases the expression of estrogen receptor-α (ERα) and promotes epithelial-mesenchymal transition (EMT) in prostate cancer. Moreover, MC-LR-induced decreased E-cadherin levels, increased vimentin levels, and increased migratory and invasive capacities of prostate cancer cells were markedly suppressed upon ERα knockdown. MC-LR-induced xenograft tumor growth and lung metastasis in BALB/c nude mice can be effectively alleviated with ERα knockdown. Our data demonstrated that MC-LR upregulated vimentin and downregulated E-cadherin through activating ERα, promoting migration and invasion of prostate cancer cells. Our findings highlight the role of MC-LR in prostate cancer, providing new perspectives to understand MC-LR-induced prostatic toxicity.
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  • 文章类型: Journal Article
    在激素受体阳性转移性乳腺癌(HR+MBC)中,内分泌抵抗通常是由于编码雌激素受体α(ERα)的基因ESR1的遗传改变。虽然ESR1点突变(ESR1-MUT)通过组成型激活引起对芳香化酶抑制(AI)的获得性抗性,对ESR1融合(ESR1-FUS)的分子功能和临床后果知之甚少。本病例系列在现有ESR1-FUS文献的背景下讨论了4例HR+MBC伴ESR1-FUS的患者。我们考虑了治疗策略,并提出了以下假设:CDK4/6抑制(CDK4/6i)可能对具有功能性配体结合域交换的ESR1-FUS有效。这些病例强调了在HR+MBC患者中筛查ESR1-FUS的重要性,同时继续研究这些基因组重排的精确治疗。
    In hormone receptor-positive metastatic breast cancer (HR+ MBC), endocrine resistance is commonly due to genetic alterations of ESR1, the gene encoding estrogen receptor alpha (ERα). While ESR1 point mutations (ESR1-MUT) cause acquired resistance to aromatase inhibition (AI) through constitutive activation, far less is known about the molecular functions and clinical consequences of ESR1 fusions (ESR1-FUS). This case series discusses 4 patients with HR+ MBC with ESR1-FUS in the context of the existing ESR1-FUS literature. We consider therapeutic strategies and raise the hypothesis that CDK4/6 inhibition (CDK4/6i) may be effective against ESR1-FUS with functional ligand-binding domain swaps. These cases highlight the importance of screening for ESR1-FUS in patients with HR+ MBC while continuing investigation of precision treatments for these genomic rearrangements.
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  • 文章类型: Journal Article
    原发性卵巢功能不全(POI)是一种罕见的疾病,其临床特征是卵巢卵泡耗竭或功能障碍,并且在40岁之前是POI的截止年龄。这是一种复杂的疾病,其病因涉及几个因素。然而,遗传因素在该疾病的易感性中起主要作用。
    本研究旨在调查基质金属肽酶2(MMP2)基因中rs243865的多态性以及雌激素受体1(ESR1)基因中rs2234693和rs940799的多态性。35岁以下的伊朗妇女对POI的易感性。
    这项病例对照研究是对150名患有POI的女性和150名健康女性进行的,这些女性被转诊到亚兹德生殖科学研究所,亚兹德,伊朗在2020年5月至10月之间。使用四扩增难治性突变系统聚合酶链反应对ESR1rs9340799,rs2234693和MMP2rs243865多态性进行基因分型。此外,通过SNPanalyzer软件进行单倍型分析和连锁不平衡研究。
    我们的研究揭示了rs243865TT的频率,CC基因型在MMP2基因和rs2234693CC,TT;和rs9340799GG,与对照组相比,病例组中ESR1基因中的AA更为普遍。此外,ESR1rs2234693和rs9340799基因型与我们人群的疾病发展显着相关。在ESR1基因2个多态性的4个单倍型中,rs2234693T/rs9340799A单倍型与POI风险相关。
    ESR1rs2234693和rs9340799多态性与我们人群的POI密切相关。
    UNASSIGNED: Primary ovarian insufficiency (POI) is a rare disease clinically characterized by ovarian follicles depletion or dysfunction and menopause before the age of 40 yr as the cut-off age for POI. It is a complex disease, and its etiology involves several factors. However, genetic factors have a predominant role in the susceptibility to the disease.
    UNASSIGNED: This study aims to investigate the polymorphisms of rs243865 in the matrix metallopeptidase 2 (MMP2) gene and rs2234693 and rs9340799 in the estrogen receptor 1 (ESR1) gene with susceptibility to POI in Iranian women under 35 yr.
    UNASSIGNED: This case-control study was performed on 150 women with POI and 150 healthy women who were referred to Yazd Reproductive Sciences Institute, Yazd, Iran between May-October 2020. The genotyping of ESR1 rs9340799, rs2234693, and MMP2 rs243865 polymorphism was done using tetra-amplification refractory mutation system-polymerase chain reaction. In addition, haplotype analysis and linkage disequilibrium were investigated by SNPanalyzer software.
    UNASSIGNED: Our study revealed the frequency of rs243865 TT, CC genotypes in the MMP2 gene and rs2234693 CC, TT; and rs9340799 GG, AA in the ESR1 gene were more prevalent in the case group compared to the control group. In addition, ESR1 rs2234693 and rs9340799 genotypes showed significant association with the development of the disease in our population. Among 4 haplotypes for 2 polymorphisms in the ESR1 gene, rs2234693T/rs9340799A haplotype was associated with conferring risk to POI.
    UNASSIGNED: ESR1 rs2234693 and rs9340799 polymorphism were strongly associated with our population\'s POI.
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  • 文章类型: Journal Article
    背景:我们先前报道了ESR1和ESR2基因变异与乳腺癌(BC)风险升高之间的关联。在这里,我们调查了常见的ESR1和ESR2基因变体与三阴性BC(TNBC)的关联。
    方法:这项回顾性病例对照研究涉及488例BC患者(130例TNBC,358例非TNBC患者)。通过实时PCR进行ESR1(rs2234693,rs9340799,rs3020314,rs3798577)和ESR2(rs928554,rs944459,rs4986938,rs1256049,rs1256030,rs1271572)基因分型。
    结果:虽然ESR1变异的次要等位基因频率(MAF)在TNBC和非TNBC受试者之间相当,在TNBC患者中发现ESR2rs1256049MAF明显更高。在TNBC病例中发现ESR1rs3798577T/C和C/C基因型的频率明显更高,ESR2rs928554、rs1256049和rs1271572基因型分布差异显著。根据共显性和显性模型,TNBC风险增加与ESR1rs3798577T/C和C/C基因型相关。而根据共显性和隐性模型,ESR2rs928554与TNBC呈正相关,根据共显性和显性模型,ESR2rs1256049与TNBC呈正相关。在ESR2rs1271572-ESR1rs3020314,ESR2rs1271572-ESR1rs9340799和ESR2rs1271572-ESR1rs2234693,ESR2rs4986938-ESR1rs2234693和ESR2rs928554-ESR1rs9340799之间发现了正相互作用。单倍型分析证实了ESR1CATT与TNBC的正相关,ACGGCTC和ACGGTTESR2单倍型与TNBC呈正相关。
    结论:本研究结果证实了独特的ESR1和ESR2遗传变异与TNBC风险改变的相关性。这表明这些变体与TNBC的可能的诊断和预后作用,而与它们与BC的关联无关。
    BACKGROUND: We previously reported on the association between ESR1 and ESR2 gene variants and heightened risk of breast cancer (BC). Here we investigated the association of common ESR1 and ESR2 gene variants with triple negative BC (TNBC).
    METHODS: This retrospective case-control study involved 488 BC patients (130 TNBC, 358 non-TNBC patients). ESR1 (rs2234693, rs9340799, rs3020314, rs3798577) and ESR2 (rs928554, rs944459, rs4986938, rs1256049, rs1256030, rs1271572) genotyping was done by real-time PCR.
    RESULTS: While minor allele frequencies (MAF) of ESR1 variants were comparable between TNBC and non-TNBC subjects, significantly higher ESR2 rs1256049 MAF was seen in TNBC patients. Significantly higher frequency of ESR1 rs3798577 T/C and C/C genotypes were noted in TNBC cases, and significant differences were seen in ESR2 rs928554, rs1256049, and rs1271572 genotype distribution. Increased TNBC risk was associated with ESR1 rs3798577 T/C and C/C genotypes according to codominant and dominant models, while positive association of ESR2 rs928554 with TNBC was seen according to codominant and recessive models, and positive association of ESR2 rs1256049 with TNBC was seen according to codominant and dominant models. Positive interactions were noted between ESR2 rs1271572-ESR1 rs3020314, ESR2 rs1271572-ESR1 rs9340799, and ESR2 rs1271572-ESR1 rs2234693, ESR2 rs4986938-ESR1 rs2234693, and ESR2 rs928554-ESR1 rs9340799. Haplotype analysis confirmed the positive association of ESR1 CATT with TNBC, while ACGGCTC and ACGGTT ESR2 haplotypes were positively associated with TNBC.
    CONCLUSIONS: Results of this study confirmed the association of unique ESR1 and ESR2 genetic variants with altered risk of TNBC. This suggests possible diagnostic and prognostic role of these variants with TNBC independent of their association with BC.
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  • 文章类型: Journal Article
    乳腺癌的内分泌疗法靶向ERα,其在超过70%的乳腺癌中发现。不幸的是,通常会发生内分泌抵抗,在这种情况下,选择性雌激素受体降解剂(SERD)代表转移性乳腺癌患者的最后一行治疗。Fulvestrant,目前唯一批准的SERD和第一个靶向蛋白质降解疗法之一,呈现较差的药物样特性,这导致了新一代口服SERD的开发。这篇综述总结了SERD进化的最新进展,专注于靶向蛋白质降解疗法的更广泛背景下的临床候选物及其降解基序。
    Endocrine therapies for breast cancer target ERα which is found in more than 70% of breast cancers. Unfortunately, endocrine resistance typically occurs, in which case Selective Estrogen Receptor Degraders (SERDs) represent the last line of treatment for metastatic breast cancer patients. Fulvestrant, the only currently approved SERD and one of the first targeted protein degradation therapies, presents poor drug-like properties which has led to the development of a new generation of oral SERDs. This review summarizes recent progress in the evolution of SERDs, focusing on clinical candidates and their degradation motifs within the broader context of targeted protein degradation therapies.
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  • 文章类型: Journal Article
    未经授权:提供的非结构化摘要如下:雌激素受体参与复发性自然流产(RSA)的发病机理。ESR1和ESR2基因可以介导非基因组雌激素反应。本研究旨在评估中国汉族人群中ESR1和ESR2基因多态性与RSA易感性之间的遗传关联。总共招募了258名经历过RSA的女性和264名无关的健康女性。使用Snapshot技术分析了ESR1(rs9340799,rs2234693和rs3798759)和ESR2基因(rs207764,rs4986938和rs1256049)中6个多态性的基因型。在ESR1rs9340799,rs2234693和rs3798759多态性的等位基因和基因型与RSA风险之间未检测到关联(P>.05)。与对照组相比,病例组rs9340799A-rs2234693C-rs3798759A单倍型受试者的RSA风险显着增加(P=.0005,Padj=.003,比值比[95%CI]=0.35[0.19-0.65])。然而,与对照组相比,病例组rs9340799G-rs2234693C-rs3798759A单倍型受试者的RSA风险显著降低(P=.0005,Padj=.003,比值比[95%CI]=2.99[1.57-5.70]).此外,等位基因之间没有发现关联,基因型,ESR2rs207764、rs4986938、rs1256049多态性与RSA风险的单倍型(P>.05)。总之,ESR1的单倍型rs9340799A-rs2234693C-rs3798759A可能是一个危险因素。ESR1的单倍型rs9340799G-rs2234693C-rs3798759A可能是中国汉族人群RSA的保护因素。
    UNASSIGNED: The nonstructured abstract were supplied as following: Estrogen receptor is involved in the pathogenesis of recurrent spontaneous abortion (RSA). The ESR1 and ESR2 genes can mediate nongenomic estrogen responses. This study aimed to assess the genetic association between the ESR1 and ESR2 genes polymorphisms and RSA susceptibility in a Chinese Han population. A total of 258 women who had experienced RSA and 264 unrelated healthy women were recruited. Genotypes of the 6 polymorphisms in the ESR1 (rs9340799, rs2234693, and rs3798759) and ESR2 genes (rs207764, rs4986938, and rs1256049) were analyzed using Snapshot technology. No association was detected between the alleles and genotypes of ESR1 rs9340799, rs2234693, and rs3798759 polymorphims and RSA risk (P > .05). Subjects carrying the haplotype of rs9340799A-rs2234693C-rs3798759A had a significantly increased RSA risk in the case group compared with the control group (P = .0005, Padj = .003, odds ratios [95% CI] = 0.35 [0.19-0.65]). However, subjects carrying the haplotype of rs9340799G-rs2234693C-rs3798759A had a significantly decreased RSA risk in the case group compared with the control group (P = .0005, Padj = .003, odds ratios [95% CI] = 2.99 [1.57-5.70]). In addition, no association was found between the alleles, genotypes, and haplotypes of ESR2 rs207764, rs4986938, rs1256049 polymorphisms and RSA risk (P > .05). In conclusion, the haplotype rs9340799A-rs2234693C-rs3798759A of ESR1 might be a risk factor. And the haplotype rs9340799G-rs2234693C-rs3798759A of ESR1 might be a protective factor for RSA in a Chinese Han population.
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  • 文章类型: Journal Article
    OBJECTIVE: Despite advances in therapies, the prognosis of patients with advanced gastric cancer (GC) remains poor. Several studies have demonstrated the expression of estrogen receptor alpha (ERa); however, its significance in GC remains controversial. The present study aims to report a case series of GC with ERa-positive expression and describe their clinicopathological characteristics and prognosis.
    METHODS: We retrospectively evaluated patients with GC who underwent gastrectomy with curative intent between 2009 and 2019. ERa expression was assessed by immunohistochemistry through tissue microarray construction. Patients with ERa-negative gastric adenocarcinoma served as a comparison group.
    RESULTS: During the selected period, 6 (1.8%) ERa-positive GC were identified among the 345 GC patients analyzed. All ERa-positive patients were men, aged 34-78 years, and had Lauren diffuse GC and pN+ status. Compared with ERa-negative patients, ERa-positive patients had larger tumor size (p=0.031), total gastrectomy (p=0.012), diffuse/mixed Lauren type (p=0.012), presence of perineural invasion (p=0.030), and lymph node metastasis (p=0.215). The final stage was IIA in one case, IIIA in three cases, and IIIB in two cases. Among the six ERa-positive patients, three had disease recurrence (peritoneal) and died. There was no significant difference in survival between ERa-positive and ERa-negative groups.
    CONCLUSIONS: ERa expression is less common in GC, is associated with diffuse histology and presence of lymph node metastasis, and may be a marker related to tumor progression and worse prognosis. Also, a high rate of peritoneal recurrence was observed in ERa-positive patients.
    OBJECTIVE: Apesar do avanço nas terapias, o prognóstico de pacientes com câncer gástrico (CG) avançado permanece ruim. Vários estudos demonstraram a expressão do receptor de estrogênio alfa (REa), porém seu significado no CG permanece controverso. relatar uma série de casos de CG com expressão de REa-positivo, e descrever suas características clínicopatológicas e prognóstico.
    UNASSIGNED: Avaliamos retrospectivamente os pacientes com CG submetidos à gastrectomia com intenção curativa entre 2009 e 2019. A expressão do REa foi avaliada por imuno-histoquímica por meio da construção de microarranjos de tecido (TMA). Pacientes com adenocarcinoma gástrico ERa-negativos serviram como grupo comparação.
    RESULTS: No período selecionado, foram identificados 6 (1,8%) CG REa-positivos entre os 345 CG analisados. Todos os ERa-positivos eram homens, com idades entre 34-78 anos, tinham CG do tipo difuso de Lauren e pN+. Comparado aos REa-negativos, os CG REa-positivos associaram-se a maior diâmetro (p=0,031), gastrectomia total (p=0,012), tipo de Lauren difuso/misto (p=0,012), presença de invasão perineural (p=0,030) e metástase linfonodal (p=0,215). O estágio final foi o IIA em um caso; IIIA em três e IIIB em dois casos. Entre os 6 pacientes REa -positivos, 3 tiveram recorrência da doença (peritoneal) e morreram. Não houve diferença significativa na sobrevida entre os grupos REa-positivo e negativo.
    UNASSIGNED: A expressão do REa é menos comum no CG, estando associada à histologia difusa e presença de metástases linfonodal, podendo servir como um marcador relacionado à progressão tumoral e pior prognóstico. Além disso, uma alta taxa de recorrência peritoneal foi observada em pacientes ERa-positivos.
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  • 文章类型: Journal Article
    蛋白质的灵活性对实验者和建模者来说都是具有挑战性的,尤其是在药物设计领域。雌激素受体α(ERα)是广泛研究的核受体(NR),是众所周知的治疗靶标,在发育和生理学中具有重要作用。在内分泌干扰的标准毒性测试中,它也是经常脱靶的。这里,我们的目的是评估这种特征明确的药物靶标的构象空间和大分子灵活性的描述程度。我们的方法通过分子动力学模拟和虚拟筛选来利用数百个晶体结构。对数百个晶体结构的分析证实了两种主要构象状态的存在,被称为“激动剂”和“拮抗剂”,主要区别在于C末端螺旋H12的方向,该螺旋用于封闭结合袋。ERα还显示出一些循环灵活性,以及其活性位点的可变侧链取向。我们仔细检查了标准分子动力学模拟或晶体学细化作为整体概括了可用晶体结构阵列所看到的大多数可变性特征的程度。并行,我们研究了BindingDB中存在的所有高亲和力ERα配体实现令人信服的对接所需的灵活性的种类和程度。仅使用一个带有几个侧链的构象设置为柔性,或在对接过程中并行的静态结构集合导致了良好的质量和相似的姿态预测。这些结果表明,已知的数百种晶体结构可以适当地描述ERα配体结合域的整个构象范围。这为更好的药物设计和亲和力计算开辟了道路。
    Protein flexibility is challenging for both experimentalists and modellers, especially in the field of drug design. Estrogen Receptor alpha (ERα) is an extensively studied Nuclear Receptor (NR) and a well-known therapeutic target with an important role in development and physiology. It is also a frequent off-target in standard toxicity tests for endocrine disruption. Here, we aim to evaluate the degree to which the conformational space and macromolecular flexibility of this well-characterized drug target can be described. Our approach exploits hundreds of crystallographic structures by means of molecular dynamics simulations and of virtual screening. The analysis of hundreds of crystal structures confirms the presence of two main conformational states, known as \'agonist\' and \'antagonist\', that mainly differ by the orientation of the C-terminal helix H12 which serves to close the binding pocket. ERα also shows some loop flexibility, as well as variable side-chain orientations in its active site. We scrutinized the extent to which standard molecular dynamics simulations or crystallographic refinement as ensemble recapitulate most of the variability features seen by the array of available crystal structures. In parallel, we investigated on the kind and extent of flexibility that are required to achieve convincing docking for all high-affinity ERα ligands present in BindingDB. Using either only one conformation with a few side-chains set flexible, or static structure ensembles in parallel during docking led to good quality and similar pose predictions. These results suggest that the several hundreds of crystal structures already known can properly describe the whole conformational universe of ERα\'s ligand binding domain. This opens the road for better drug design and affinity computation.
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  • 文章类型: Journal Article
    传统草药(THM)包含大量的天然化合物。它们中的大多数在给药后被代谢成不同的结构,这使得对THM行动模式的澄清更加复杂。为了评估这些成分和代谢物的生物活性,计算机模拟技术是有帮助的。我们专注于混合溶剂分子动力学(MD)模拟,用于天然产物的可药用性评估。混合溶剂MD是一种计算机模拟方法,用于探索靶蛋白上的配体结合位点,使用水和有机分子混合物。有机小分子的选择是预测天然产物特性的重要因素。在这项研究中,我们使用已知的雌激素受体晶体结构和染料木素作为测试案例,并探索反映天然产物特征的片段。我们发现,与DrugBank数据库相比,具有4-吡喃酮结构的结构更经常包含在天然产物数据库中,我们选择性地检测了雌激素受体α和β的已知结合位点。结果表明,4-吡喃酮结构可能有助于预测黄酮类化合物的蛋白质可药用性。此外,混合溶剂MD模拟区分了染料木素在雌激素受体β和α之间的选择性,表明模拟可以使用不同于传统配体对接的指数进行评估。尽管这种方法仍处于早期阶段,它有可能为了解天然产物的各种生物活性提供有价值的信息。
    Traditional herbal medicine (THM) comprises a vast number of natural compounds. Most of them are metabolized into different structures after administration, which makes the clarification of THM\'s mode of action more complicated. To evaluate the biological activities of those components and metabolites, in silico simulation technology is helpful. We focused on mixed-solvent molecular dynamics (MD) simulation for druggability assessment of natural products. Mixed-solvent MD is an in silico simulation method for the exploration of ligand-binding sites on target proteins, which uses water and an organic molecule mixture. The selection of organic small molecules is an important factor for predicting the characteristics of natural products. In this study, we used the known crystal structure of estrogen receptors with genistein as a test case and explored fragments reflecting the characteristics of natural products. We found that structures with a 4-pyrone structure are more often included in the natural products database compared with the DrugBank database, and we selectively detected the known-binding sites of estrogen receptor α and β. The results indicate that the 4-pyrone structure might be promising for predicting the protein druggability of flavonoids. Additionally, mixed-solvent MD simulation discriminates the selectivity of genistein between estrogen receptor β and α, indicating that the simulation can be evaluated using indices that differ from those of traditional ligand docking. Although this approach is still in its early stages, it has the potential to provide valuable information for understanding the diverse biological activities of natural products.
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