DNA replication

DNA 复制
  • 文章类型: Journal Article
    微小染色体维持(MCM)蛋白是活性解旋酶的组成部分,对于DNA复制的启动至关重要。MCM功能的失调导致异常细胞增殖和基因组不稳定。MCM与细胞因子的相互作用,包括Cdc45和GINS,确定活性解旋酶的形成和解旋酶的功能。MCM的功能决定了DNA复制的命运,因此,基因组完整性。这种复合物在癌前细胞中上调,可以作为诊断应用的重要工具。MCM蛋白复合物可以是各种癌症中重要的广谱治疗靶标。研究支持了MCM在癌症诊断及其治疗中的潜力和应用。在这篇文章中,我们讨论了MCM及其相关因子在DNA复制和癌症发病机制中的生理作用。
    The minichromosome maintenance (MCM) protein is a component of an active helicase that is essential for the initiation of DNA replication. Dysregulation of MCM functions contribute to abnormal cell proliferation and genomic instability. The interactions of MCM with cellular factors, including Cdc45 and GINS, determine the formation of active helicase and functioning of helicase. The functioning of MCM determines the fate of DNA replication and, thus, genomic integrity. This complex is upregulated in precancerous cells and can act as an important tool for diagnostic applications. The MCM protein complex can be an important broad-spectrum therapeutic target in various cancers. Investigations have supported the potential and applications of MCM in cancer diagnosis and its therapeutics. In this article, we discuss the physiological roles of MCM and its associated factors in DNA replication and cancer pathogenesis.
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  • 文章类型: Systematic Review
    背景:脱氧核糖核酸(DNA)损伤的积累会降低细胞健康,增加发育和退行性疾病的风险并加速衰老。优化营养摄入可以最大程度地减少DNA损伤的发生。
    目的:(i)收集并系统地分析补充微量营养素和植物化学物质对人体DNA损伤基线水平的影响的高水平证据,以及(ii)利用这些知识来确定这些必需的微量营养素或非必需的植物化学物质中的哪一种在人体中促进DNA完整性。
    方法:我们对PubMed数据库进行了系统的文献检索,以确定介入,prospective,横截面,或体外研究,探索营养素与已建立的与发育和退行性疾病风险相关的DNA损伤生物标志物之间的关联。生物标志物包括淋巴细胞染色体畸变,淋巴细胞和口腔细胞微核,DNA甲基化,淋巴细胞/白细胞DNA链断裂,DNA氧化,端粒长度,端粒酶活性,和线粒体DNA突变.只有随机化,选择在人体中进行的受控干预和非受控纵向干预研究进行评估和数据提取.这些研究根据其研究设计的质量进行排名。
    结果:总而言之,在124篇文章中,有96篇报告了质量评估得分≥5(最高得分为7)的研究,并纳入了最终审查。基于这些研究,与保护作用相关的营养素包括维生素A及其前体β-胡萝卜素,维生素C,E,B1,B12,叶酸,矿物质硒和锌,和植物化学物质,如姜黄素(与胡椒碱),番茄红素,和原花青素。这些发现强调了参与(i)DNA代谢和修复(叶酸,维生素B12和锌),和(ii)预防氧化应激和炎症(维生素A,C,E,番茄红素,姜黄素,原花青素,硒和锌)。
    结论:补充某些微量营养素及其组合可以通过改善基因组完整性的维持来减少DNA损伤并促进细胞健康。
    Accumulation of deoxyribonucleic acid (DNA) damage diminishes cellular health, increases risk of developmental and degenerative diseases, and accelerates aging. Optimizing nutrient intake can minimize accrual of DNA damage. The objectives of this review are to: 1) assemble and systematically analyze high-level evidence for the effect of supplementation with micronutrients and phytochemicals on baseline levels of DNA damage in humans, and 2) use this knowledge to identify which of these essential micronutrients or nonessential phytochemicals promote DNA integrity in vivo in humans. We conducted systematic literature searches of the PubMed database to identify interventional, prospective, cross-sectional, or in vitro studies that explored the association between nutrients and established biomarkers of DNA damage associated with developmental and degenerative disease risk. Biomarkers included lymphocyte chromosome aberrations, lymphocyte and buccal cell micronuclei, DNA methylation, lymphocyte/leukocyte DNA strand breaks, DNA oxidation, telomere length, telomerase activity, and mitochondrial DNA mutations. Only randomized, controlled interventions and uncontrolled longitudinal intervention studies conducted in humans were selected for evaluation and data extraction. These studies were ranked for the quality of their study design. In all, 96 of the 124 articles identified reported studies that achieved a quality assessment score ≥ 5 (from a maximum score of 7) and were included in the final review. Based on these studies, nutrients associated with protective effects included vitamin A and its precursor β-carotene, vitamins C, E, B1, B12, folate, minerals selenium and zinc, and phytochemicals such as curcumin (with piperine), lycopene, and proanthocyanidins. These findings highlight the importance of nutrients involved in (i) DNA metabolism and repair (folate, vitamin B12, and zinc) and (ii) prevention of oxidative stress and inflammation (vitamins A, C, E, lycopene, curcumin, proanthocyanidins, selenium, and zinc). Supplementation with certain micronutrients and their combinations may reduce DNA damage and promote cellular health by improving the maintenance of genome integrity.
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  • 文章类型: Journal Article
    抗结核药物开发领域取得全面进展,然而,很少有药物分子达到II期临床试验,因此,“终结结核病”仍然是一个全球性的挑战。结核分枝杆菌(Mtb)特定代谢途径的抑制剂在制定抗结核药物发现策略方面具有重要意义。靶向DNA复制的先导化合物,蛋白质合成,细胞壁生物合成,细菌毒力和能量代谢正在成为对抗Mtb在宿主内生长和存活的潜在化疗选择。最近,计算机模拟方法已成为鉴定Mtb特定蛋白质靶标的合适抑制剂的最有前途的工具。对这些抑制剂和相互作用机制的基本理解的更新可能为新药开发和递送方法的未来前景带来希望。这篇综述提供了具有潜在抗分枝杆菌活性的小分子及其在Mtb中的靶途径,如细胞壁生物合成的集体印象。DNA复制,转录和翻译,外排泵,抗毒力途径和一般代谢。已经讨论了特异性抑制剂与它们各自的蛋白质靶标相互作用的机制。这种有影响力的研究领域的全面知识将基本上反映在新药物分子和有效递送方法的发现中。此叙述性综述涵盖了新兴靶标和有希望的n知识,这些知识可能会转化为抗结核药物的发现。
    Advancement in the area of anti-tubercular drug development has been full-fledged, yet, a very less number of drug molecules have reached phase II clinical trials, and therefore \"End-TB\" is still a global challenge. Inhibitors to specific metabolic pathways of Mycobacterium tuberculosis (Mtb) gain importance in strategizing anti-tuberculosis drug discovery. The lead compounds that target DNA replication, protein synthesis, cell wall biosynthesis, bacterial virulence and energy metabolism are emerging as potential chemotherapeutic options against Mtb growth and survival within the host. In recent times, the in silico approaches have become most promising tools in the identification of suitable inhibitors for specific protein targets of Mtb. An update in the fundamental understanding of these inhibitors and the mechanism of interaction may bring hope to future perspectives in novel drug development and delivery approaches. This review provides a collective impression of the small molecules with potential antimycobacterial activities and their target pathways in Mtb such as cell wall biosynthesis, DNA replication, transcription and translation, efflux pumps, antivirulence pathways and general metabolism. The mechanism of interaction of specific inhibitor with their respective protein targets has been discussed. The comprehensive knowledge of such an impactful area of research would essentially reflect in the discovery of novel drug molecules and effective delivery approaches. This narrative review encompasses the knowledge of emerging targets and promising chemical inhibitors that could potentially translate in to the anti-TB-drug discovery.
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  • 文章类型: Journal Article
    Cancer is the second leading cause of death globally, exceeded only by cardiovascular disease. Despite the introduction of several survival-prolonging treatment modalities, including targeted therapy and immunotherapy, the overall prognosis for the metastatic disease remains challenging. Therefore, the identification of new molecular biomarkers and therapeutic targets related to cancer diagnosis and prognosis is of paramount importance. DNA polymerase delta 1 (POLD1), a catalytic and proofreading subunit of the DNA polymerase δ complex, performs a crucial role in DNA replication and repair processes. Recently, germline and somatic mutations of the POLD1 gene have been acknowledged in several malignancies. Moreover, diversified POLD1 expression profiles have been reported in association with clinicopathological features in a variety of tumor types. With this review, we aim to summarize the current knowledge on the role of POLD1 in cancers. In addition, we discuss the future prospects and clinical applications of the assessment of POLD1 mutation and expression patterns in tumors.
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  • 文章类型: Journal Article
    随着细菌的增殖,DNA复制,染色体分离,细胞壁合成,和胞质分裂同时发生,需要严格调节和协调。尽管这些细胞周期过程已经被研究了几十年,几种机制仍然难以捉摸,特别是在金黄色葡萄球菌等球菌形细胞中。近年来,我们在理解葡萄球菌如何分裂方面取得了重大进展,包括新的,对细胞壁合成和分裂位点选择机制的基本见解。此外,已鉴定并部分表征了几种新的蛋白质和涉及细胞周期复制起始或进程调节的机制。在这次审查中,我们将总结我们目前对球形模型细菌金黄色葡萄球菌细胞周期过程的理解,重点是在理解这些过程如何受到监管方面的最新进展。
    As bacteria proliferate, DNA replication, chromosome segregation, cell wall synthesis, and cytokinesis occur concomitantly and need to be tightly regulated and coordinated. Although these cell cycle processes have been studied for decades, several mechanisms remain elusive, specifically in coccus-shaped cells such as Staphylococcus aureus. In recent years, major progress has been made in our understanding of how staphylococci divide, including new, fundamental insights into the mechanisms of cell wall synthesis and division site selection. Furthermore, several novel proteins and mechanisms involved in the regulation of replication initiation or progression of the cell cycle have been identified and partially characterized. In this review, we will summarize our current understanding of the cell cycle processes in the spheroid model bacterium S. aureus, with a focus on recent advances in the understanding of how these processes are regulated.
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  • 文章类型: Journal Article
    Parvoviruses possess a single-stranded DNA genome of about 5 kb, which contains two open reading frames (ORFs), one encoding nonstructural (NS) proteins, the other capsid proteins. The NS1 protein contains an N-terminal origin-binding domain, a helicase domain, and a C-terminal transactive domain, and is essential for effective viral replication and production of infectious virus. We first summarize the developments in the structure of NS1 protein, including the original binding domain and the helicase domain. We discuss the role of different DNA substrates in the oligomerization of these two domains of NS1. During the parvovirus life cycle, the NS1 protein is closely related to the viral gene expression, viral replication, and infection. We provide the current understanding of the impact of parvovirus NS1 protein mutations on its biological properties. Overall, in this review, we focus on the structure and function of the parvoviral NS1 protein.
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  • 文章类型: Journal Article
    热应激对各种类型的DNA损伤有直接作用,这取决于细胞暴露于不同气候条件下的细胞周期阶段。进行了文献综述,以系统地研究和评估热暴露后热应激和DNA损伤的总体影响。在这项研究中,电子数据库,包括PubMed,Scopus,和WebofScience进行了搜索,以找到有关不同环境温度下DNA损伤的相关文献。结果包括(1)测量热暴露中的DNA损伤,(2)三种不同的定量方法(彗星测定,8-羟基-2-脱氧鸟苷(8-OHdG),和γ-H2AX),和(3)用于中度(31)和高温(42)的协议。证据表明,长时间暴露和非常高的温度可以通过天然蛋白质中的聚集体引起DNA损伤的增加,ROS生成,细胞死亡,以及在湿热和干热的气候条件下对生殖的损害。急性热应激暴露后,DNA损伤会大幅增加,特别是在热带和亚热带气候条件下。本系统文献综述的结果表明,热应激暴露与抑制DNA损伤修复之间存在正相关。
    Thermal stress has a direct effect on various types of DNA damage, which depends on the stage of the cell cycle when the cell is exposed to different climate conditions. A literature review was conducted to systematically investigate and assess the overall effect of heat stress and DNA damage following heat exposure. In this study, electronic databases including PubMed, Scopus, and Web of Science were searched to find relevant literature on DNA damage in different ambient temperatures. Outcomes included (1) measurement of DNA damage in heat exposure, (2) three different quantification methods (comet assay, 8-hydroxy-2-deoxyguanosine (8-OHdG), and γ-H2AX), and (3) protocols used for moderate (31) and high temperatures (42). The evidence shows that long exposure and very high temperature can induce an increase in DNA damage through aggregate in natural proteins, ROS generation, cell death, and reproductive damage in hot-humid and hot-dry climate conditions. A substantial increase in DNA damage occurs following acute heat stress exposure, especially in tropical and subtropical climate conditions. The results of this systematic literature review showed a positive association between thermal stress exposure and inhibition of repair of DNA damage.
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  • 文章类型: Journal Article
    Physiological and pathological roles for R-loop structures continue to be discovered, and studies suggest that R-loops could contribute to human disease. R-loops are nucleic acid structures characterized by a DNA:RNA hybrid and displaced single-stranded DNA that occur in connection with transcription. R-loops form naturally and have been shown to be important for a number of physiological processes such as mitochondrial replication initiation, class switch recombination, DNA repair, modulating DNA topology, and regulation of gene expression. However, subsets of R-loops or persistent R-loops lead to DNA breaks, chromosome rearrangement, and genome instability. In addition, R-loops have been linked to human diseases, specifically neurological disorders and cancer. Of the large amount of research produced recently on R-loops, this review covers evidence for R-loop involvement in normal cellular physiology and pathophysiology, as well as describing factors that contribute to R-loop regulation.
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  • 文章类型: Journal Article
    无菌α基序和含组氨酸/天冬氨酸结构域的蛋白1(SAMHD1),真核生物中唯一的脱氧核苷酸三磷酸(dNTP)水解酶,在调节细胞dNTP池的动态平衡和比例中起着至关重要的作用。此外,已有报导SAMHD1介入了几种疾病的病理进程。纯合SAMHD1突变已在免疫系统疾病中被鉴定,例如自身免疫性疾病Aicardi-Goutières综合征(AGS),其主要发病机制与dNTPs的异常积累和不成比例有关。SAMHD1也被认为是抑制病毒感染过程的内在病毒限制因子,包括逆转录,复制,包装和传输。此外,SAMHD1已被证明在DNA损伤后的同源重组过程中促进基因组完整性,因此被认为是肿瘤治疗应用的有希望的候选人。本文综述了SAMHD1调控dNTP稳态和DNA损伤反应的分子机制。此外,据报道,它对肿瘤发生和肿瘤治疗的潜在影响。
    Sterile alpha motif and histidine/aspartic acid domain‑containing protein 1 (SAMHD1), the only deoxynucleotide triphosphate (dNTP) hydrolase in eukaryotes, plays a crucial role in regulating the dynamic balance and ratio of cellular dNTP pools. Furthermore, SAMHD1 has been reported to be involved in the pathological process of several diseases. Homozygous SAMHD1 mutations have been identified in immune system disorders, such as autoimmune disease Aicardi‑Goutières syndrome (AGS), whose primary pathogenesis is associated with the abnormal accumulation and disproportion of dNTPs. SAMHD1 is also considered to be an intrinsic virus‑restriction factor by suppressing the viral infection process, including reverse transcription, replication, packaging and transmission. In addition, SAMHD1 has been shown to promote genome integrity during homologous recombination following DNA damage, thus being considered a promising candidate for oncotherapy applications. The present review summarizes the molecular mechanisms of SAMHD1 regarding the regulation of dNTP homeostasis and DNA damage response. Additionally, its potential effects on tumorigenesis and oncotherapy are reported.
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  • 文章类型: Journal Article
    H1N1(猪流感)是由甲型流感病毒引起的,它是正粘病毒科的成员。H1N1通过空气在人与人之间传播,有时从猪到人。流感病毒有不同的RNA片段,这可以重新确定产生新的病毒株,有可能在未接种疫苗的人群中爆发疫情。基因重组是猪中出现新菌株的过程,因为它具有人类流感病毒和禽流感病毒的特异性受体。H1N1与α-2,6糖苷键特异性结合,它存在于人类呼吸道细胞和猪中。考虑到病毒在活细胞内快速繁殖的事实,快速检测方法需要一个小时。目前,世卫组织推荐的猪流感检测方法包括在特定检测中心进行实时PCR,需要3-4小时。还开发了许多方法,例如抗原-抗体或RT-LAMP和DNA生物传感器,它们是快速和更灵敏的。这篇综述描述了H1N1诊断中的各种挑战,以及传统方法相对于最新方法的优缺点,特别强调生物传感器。
    H1N1 (Swine flu) is caused by influenza A virus, which is a member of Orthomyxoviridae family. Transmission of H1N1 occurs from human to human through air or sometimes from pigs to humans. The influenza virus has different RNA segments, which can reassert to make new virus strain with the possibility to create an outbreak in unimmunized people. Gene reassortment is a process through which new strains are emerging in pigs, as it has specific receptors for both human influenza and avian influenza viruses. H1N1 binds specifically with an α-2,6 glycosidic bond, which is present in human respiratory tract cells as well as in pigs. Considering the fact of fast multiplication of viruses inside the living cells, rapid detection methods need an hour. Currently, WHO recommended methods for the detection of swine flu include real-time PCR in specific testing centres that take 3-4 h. More recently, a number of methods such as Antigen-Antibody or RT-LAMP and DNA biosensors have also been developed that are rapid and more sensitive. This review describes the various challenges in the diagnosis of H1N1, and merits and demerits of conventional vis-à-vis latest methods with special emphasis on biosensors.
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