Codon, Nonsense

密码子,胡说八道
  • 文章类型: Case Reports
    外胚层发育异常综合征1(EDSS1)是一种与PVL4基因突变相关的极为罕见的疾病。它的特点是稀疏,脆弱的头发,眉毛和睫毛,牙列和指甲异常,伴随着双侧皮肤并累及手指和脚趾。我们报告了一个2岁的女孩,她向我们展示了手的第三和第四空间的双边完全简单的并字关系,以及涉及第二至第四脚趾的双脚的双侧并肢。经检查,稀疏的头发和眉毛,随着牙列异常,被注意到。对受影响儿童及其父亲进行了全面的临床检查和基因分析,表现出相似的临床特征。遗传分析揭示了两个个体的PVL4基因中的纯合无义突变。根据文献,EDSS1在全球仅有10个家庭被报道,印度没有报告病例。证据等级:V级(治疗)。
    Ectodermal dysplasia-syndactyly syndrome 1 (EDSS1) is an exceedingly rare condition associated with mutations in the PVL4 gene. It is characterised by sparse, brittle hair, eyebrows and eyelashes, abnormal dentition and nails, along with bilateral cutaneous syndactyly involving the fingers and toes. We report a 2-year-old girl who presented to us with bilateral complete simple syndactyly of the third and fourth web spaces of the hands, along with bilateral syndactyly of both feet involving the second to fourth toes. Upon examination, sparse hair and eyebrows, along with abnormal dentition, were noted. Thorough clinical examination and genetic analysis were conducted on the affected child and her father, who exhibited similar clinical features. Genetic analysis revealed a homozygous nonsense mutation in the PVL4 gene in both individuals. According to the literature, EDSS1 has been reported in only 10 families worldwide, and there are no reported cases from India. Level of Evidence: Level V (Therapeutic).
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  • 文章类型: Case Reports
    DeSanto-Shinawi综合征(DESSH,OMIM#616708)是由WAC基因的致病变异所惹起的一种罕见的遗传病。这种综合征的特点是广泛的身体和神经症状,包括畸形特征,发育迟缓,智力残疾,和行为异常。DESSH在2015年由DeSanto描述,从那以后,全世界只报告了几十例。最近的研究集中在确定该综合征的潜在遗传原因以及探索潜在的治疗方法。在这份报告中,我们描述了一个女性病例,其畸形特征包括长睑裂,鼻根凹陷,轻度球形鼻尖,薄薄的上唇,多毛症,短手指,和智力残疾,说话延迟,和运动迟缓。此外,她有行为异常,比如激动,焦虑,注意缺陷多动障碍(ADHD)。临床外显子组测序显示在WAC基因c.1837C>T的外显子13中有致病性杂合无义变异,p.(Arg613Ter)具有从头继承。据我们所知,这是土耳其报告的第一例DESSH。我们旨在报告这种罕见综合征,并将我们病例的临床表现与文献中先前报道的病例进行比较。
    DeSanto-Shinawi syndrome (DESSH, OMIM #616708) is a rare genetic disorder caused by pathogenic variants in the WAC gene. This syndrome is characterized by a wide range of physical and neurological symptoms including dysmorphic features, developmental delay, intellectual disability, and behavioral abnormalities. DESSH was described by DeSanto in 2015, and since then, only a few dozen cases have been reported worldwide. Recent research has focused on identifying the underlying genetic cause of the syndrome as well as exploring potential treatments. In this report, we describe a female case who had dysmorphic features including long palpebral fissures, depressed nasal root, mild bulbous nasal tip, thin upper lip, hypertrichosis, short fingers, and intellectual disability, speech delay, and motor retardation. In addition, she had behavioral abnormalities such as agitation, anxiety, and attention deficit hyperactivity disorder (ADHD). Clinical exome sequencing showed a pathogenic heterozygous nonsense variant in exon 13 of the WAC gene c.1837C>T, p.(Arg613Ter) with de novo inheritance. To the best of our knowledge, this is the first case of DESSH reported from Turkey. We aimed to report this rare syndrome and compare the clinical findings of our case with previously reported cases in the literature.
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  • 文章类型: Case Reports
    经典途径(CP)的早期补体成分的缺陷与系统性红斑狼疮(SLE)或SLE样综合征和严重的化脓性感染有关。其中,到目前为止,已经报告了9例完全的C1缺乏症。这里,我们描述了一名34岁的男性患者,从童年开始反复感染,包括肺炎球菌和脑膜炎球菌,丹毒,皮下脓肿,和上呼吸道的反复感染。患者还表现为成人发作性SLE,符合ACR标准的7/11和2019年EULAR/ACR分类标准的34,以及IV-G(A)类增生性狼疮性肾炎(LN)。补体级联的筛选显示出不可估量的低CH50,而替代途径(AP)功能正常。随后的补体成分测定显示无法检测到C1r和C1q水平低的C1s,C3正常,C4和C2浓度略有升高。患者没有抗C1q抗体。肾活检显示IV-G(A)LN类,补体C1q阳性沿肾小球基底膜(GBM)和IgG弱沉积,IgM,补片和GBM中的C3和C4。在基于ELISA的功能测定C4d沉积中,患者的补体活性缺失通过添加C1完全恢复。通过全基因组测序分析患者的基因组,显示C1S基因中的两个截短变体。一个突变位于外显子5的核苷酸514,由G到T的核苷酸取代引起,导致Gly172的无义突变(p。Gly172*)。另一个突变位于外显子7的核苷酸750,其中C被G取代,导致Tyr250的无义突变(p.Tyr250*).两种突变都产生过早的终止密码子,并且以前在文献中没有报道过。这些基因发现,再加上循环中没有C1,强烈提示我们的患者存在复合杂合子C1s缺乏症,在补体级联中没有额外的缺陷。与之前的C1缺陷案例一样,患者对利妥昔单抗反应良好.本病例强调了关于CP在SLE病因发病机制中的作用的悬而未决的问题。
    Deficiencies of the early complement components of the classical pathway (CP) are well-documented in association with systemic lupus erythematosus (SLE) or SLE-like syndromes and severe pyogenic infections. Among these, complete C1s deficiency has been reported in nine cases so far. Here, we describe a 34-year-old male patient who presented with severe, recurrent infections since childhood, including meningitides with pneumococci and meningococci, erysipelas, subcutaneous abscess, and recurrent infections of the upper airways. The patient also exhibited adult-onset SLE, meeting 7/11 of the ACR criteria and 34 of the 2019 EULAR/ACR classification criteria, along with class IV-G (A) proliferative lupus nephritis (LN). A screening of the complement cascade showed immeasurably low CH50, while the alternative pathway (AP) function was normal. Subsequent determination of complement components revealed undetectable C1s with low levels of C1r and C1q, normal C3, and slightly elevated C4 and C2 concentrations. The patient had no anti-C1q antibodies. Renal biopsy showed class IV-G (A) LN with complement C1q positivity along the glomerular basement membranes (GBMs) and weak deposition of IgG, IgM, and complement C3 and C4 in the mesangium and GBM. In an ELISA-based functional assay determining C4d deposition, the patient\'s absent complement activity was fully restored by adding C1s. The genome of the patient was analyzed by whole genome sequencing showing two truncating variants in the C1S gene. One mutation was located at nucleotide 514 in exon 5, caused by a nucleotide substitution from G to T, resulting in a nonsense mutation from Gly172 (p.Gly172*). The other mutation was located at nucleotide 750 in exon 7, where C was replaced by a G, resulting in a nonsense mutation from Tyr250 (p.Tyr250*). Both mutations create a premature stop codon and have not previously been reported in the literature. These genetic findings, combined with the absence of C1s in the circulation, strongly suggest a compound heterozygote C1s deficiency in our patient, without additional defect within the complement cascade. As in a previous C1s deficiency case, the patient responded well to rituximab. The present case highlights unanswered questions regarding the CP\'s role in SLE etiopathogenesis.
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  • 文章类型: Case Reports
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  • 文章类型: Case Reports
    背景:弹性蛋白驱动的遗传病是一组由弹性蛋白功能不全和异常蛋白的显性阴性产生驱动的复杂疾病,包括瓣上主动脉瓣狭窄(SVAS)和常染色体显性遗传皮肤松弛。这里,据报道,一个在ELN基因中出现新的无意义突变的中国男孩。
    方法:我们报告了一个1岁男孩,他表现为运动不耐受,体重随年龄增长的限制,有1年的心脏杂音史,还有腹股沟疝.基因测序揭示了ELN基因中的一种新的无义突变(c.757C>T(p。Gln253Ter),NM_000501.4)。由于严重的分支肺动脉狭窄,用自体心包重建分支肺动脉。术后3个月行腹股沟疝修补术。经过6个月的门诊随访,孩子恢复得很好,随着年龄的增长,无特殊临床症状。
    结论:我们在ELN基因中发现了一个导致轻度SVAS和重度分支肺动脉狭窄的从头无义突变。还需要考虑腹股沟疝的新表型,以可能与ELN基因相关。尽管如此,需要进一步确认。
    Elastin-driven genetic diseases are a group of complex diseases driven by elastin protein insufficiency and dominant-negative production of aberrant protein, including supravalvular aortic stenosis (SVAS) and autosomal dominant cutis laxa. Here, a Chinese boy with a novel nonsense mutation in the ELN gene is reported.
    We report a 1-year-old boy who presented with exercise intolerance, weight growth restriction with age, a 1-year history of heart murmur, and inguinal hernia. Gene sequencing revealed a novel nonsense mutation in the ELN gene (c.757 C > T (p.Gln253Ter), NM_000501.4). Due to severe branch pulmonary artery stenosis, the reconstruction of the branch pulmonary artery with autologous pericardium was performed. The inguinal hernia repair was performed 3 months postoperatively. After six months of outpatient follow-up, the child recovered well, gained weight with age, and had no special clinical symptoms.
    We identified a de novo nonsense mutation in the ELN gene leading to mild SVAS and severe branch pulmonary artery stenosis. A new phenotype of inguinal hernia was also needed to be considered for possible association with the ELN gene. Still, further confirmation will be necessary.
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  • 文章类型: Review
    背景:Sotos综合征(SS)是一种以独特的面部特征为特征的过度生长疾病,先进的骨龄,大头畸形,发育迟缓与NSD1基因的改变有关。这里,我们报告了一例4岁女性儿童由NSD1基因无义突变引起的SS。
    方法:对先证者及其父母应用全外显子组测序(WES)。使用Sanger测序来确认突变。我们使用PubMed进行了文献综述,发现12篇文章和14例出现SS的患者。
    结果:患者表现出典型的SS面部特征,手部畸形,和癫痫。WES显示从头杂合变体:NSD1(NM_022455.5),c.6095G>A,P.TRP2032*。我们还回顾了14例SS患者的表型谱,表现出多种临床表型,包括发育迟缓,癫痫发作,脊柱侧弯,听力损失,心脏和泌尿系统异常,等等。
    结论:通过文献综述总结了突变位点或类型与表型之间缺乏相关性。NSD1蛋白含有14个功能结构域,并且该无义突变位于SET结构域中。终止密码子的早期出现导致蛋白质截短。NSD1基因的单倍体不足导致过度生长障碍。
    Sotos syndrome (SS) is an overgrowth disease characterized by distinctive facial features, advanced bone age, macrocephaly, and developmental delay is associated with alterations in the NSD1 gene. Here, we report a case of a 4-year-old female child with SS caused by NSD1 gene nonsense mutation.
    Whole-exome sequencing (WES) was applied for probands and her parents. Sanger sequencing was used to confirm the mutation. We performed the literature review using PubMed and found 12 articles and 14 patients who presented with SS.
    The patient showed typical facial features of SS, hand deformities, and seizure. WES revealed de novo heterozygous variant: NSD1 (NM_022455.5), c.6095G > A, p.TRP2032*. We also reviewed the phenotype spectrum of 14 patients with SS, who exhibited a variety of clinical phenotypes, including developmental delay, seizures, scoliosis, hearing loss, cardiac and urinary system abnormalities, and so on.
    The lack of correlation between mutation sites or types and phenotypes was summarized by literature reviewing. The NSD1 protein contains 14 functional domains and this nonsense mutation was located in SET domain. Early appearance of the termination codon leads to protein truncation. Haploinsufficiency of the NSD1 gene causes the overgrowth disorders.
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  • 文章类型: Case Reports
    背景:半胱氨酸尿症和黄嘌呤尿症都是罕见的遗传性疾病,涉及泌尿系结石。然而,合并这两种疾病的病例尚未报告。
    方法:在本研究中,我们报告一例有黄嘌呤结石和高尿酸血症的胱氨酸尿症。该名二十三岁男性病人被诊断为肾结石及输尿管结石,入院后孤立运作的肾脏和高尿酸血症。通过手术切除结石,发现结石由黄嘌呤组成。
    结论:通过下一代测序技术进行的遗传检测显示,该患者携带纯合无义突变c.1113C>A(p。Tyr371*)在SLC3A1基因中,被判断为功能性致病变异。Sanger测序显示患者的父母携带这种杂合突变,这是一种致病变异,可导致胱氨酸尿症。24小时尿代谢分析显示,胱氨酸含量为644mg(<320mg/24h),表明病人有胱氨酸尿症,与基因检测结果一致。此病例表明,胱氨酸尿症和黄嘌呤结石可同时发生,并提供了两个条件之间可能联系的证据。此外,我们的研究结果证明了使用下一代测序进行基因检测在泌尿系结石患者的临床诊断和治疗中的潜在价值.
    BACKGROUND: Cystinuria and xanthinuria are both rare genetic diseases involving urinary calculi. However, cases combining these two disorders have not yet been reported.
    METHODS: In this study, we report a case of cystinuria with xanthine stones and hyperuricemia. The 23-year-old male patient was diagnosed with kidney and ureteral stones, solitary functioning kidney and hyperuricemia after admission to the hospital. The stones were removed by surgery and found to be composed of xanthine.
    CONCLUSIONS: Genetic testing by next-generation sequencing technology showed that the patient carried the homozygous nonsense mutation c.1113 C> A (p.Tyr371*) in the SLC3A1 gene, which was judged to be a functionally pathogenic variant. Sanger sequencing revealed that the patient\'s parents carried this heterozygous mutation, which is a pathogenic variant that can cause cystinuria. The 24-h urine metabolism analysis showed that the cystine content was 644 mg (<320 mg/24 h), indicating that the patient had cystinuria, consistent with the genetic test results. This case shows that cystinuria and xanthine stones can occur simultaneously, and provides evidence of a possible connection between the two conditions. Furthermore, our findings demonstrate the potential value of genetic testing using next-generation sequencing to effectively assist in the clinical diagnosis and treatment of patients with urinary calculi.
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  • 文章类型: Journal Article
    NGS方法在临床实践中的实施使研究人员能够在遗传异质性病理学的情况下有效地确定疾病的分子原因。在几种潜在致病变异的情况下,我们需要额外的分析,可以帮助选择一个适当的致病变量。在目前的研究中,我们描述了一个遗传性运动和感觉神经病(HMSN)1型(Charcot-Marie-Tooth病)的家庭病例。DNA分析显示SH3TC2基因有两个变异(c.279G>A和c.1177+5G>A),以及先前描述的MPZ基因中的变异c.449-9C>T,处于杂合状态。由于先证者的父亲无法使用,因此这项家庭隔离研究不完整。为了评估变种的致病性,进行小基因剪接分析。这项研究表明MPZ变体对剪接没有影响,但是SH3TC2基因中的c.1177+5G>A变体导致RNA序列中内含子10的122个核苷酸的保留,导致移码和过早终止密码子的发生(NP_078853.2:p。Ala393GlyfsTer2)。
    The implementation of NGS methods into clinical practice allowed researchers effectively to establish the molecular cause of a disorder in cases of a genetically heterogeneous pathology. In cases of several potentially causative variants, we need additional analysis that can help in choosing a proper causative variant. In the current study, we described a family case of hereditary motor and sensory neuropathy (HMSN) type 1 (Charcot-Marie-Tooth disease). DNA analysis revealed two variants in the SH3TC2 gene (c.279G>A and c.1177+5G>A), as well as a previously described variant c.449-9C>T in the MPZ gene, in a heterozygous state. This family segregation study was incomplete because of the proband\'s father\'s unavailability. To evaluate the variants\' pathogenicity, minigene splicing assay was carried out. This study showed no effect of the MPZ variant on splicing, but the c.1177+5G>A variant in the SH3TC2 gene leads to the retention of 122 nucleotides from intron 10 in the RNA sequence, causing a frameshift and an occurrence of a premature stop codon (NP_078853.2:p.Ala393GlyfsTer2).
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  • 文章类型: Case Reports
    背景:马凡氏综合征(MFS)是一种罕见的常染色体显性遗传性结缔组织疾病,骨骼,和眼科系统。本报告旨在描述MFS的新遗传背景和治疗预后。
    方法:先证者最初被诊断为双侧病理性近视和疑似MFS。我们进行了全外显子组测序,在先证者中发现了致病性无义FBN1突变,这证实了MFS的诊断。值得注意的是,我们在SDHB中发现了第二个致病性无义突变,这增加了患肿瘤的风险。此外,先证者核型为X三体,这可能会导致X三体综合征。在后巩膜加固手术后6个月的随访中,先证者的视力显著提高;然而,近视仍在发展。
    结论:我们报告了一例X三体基因型的MFS罕见病例,首次发生FBN1突变和SDHB突变,我们的发现可能有助于该病的临床诊断和治疗。
    Marfan syndrome (MFS) is a rare autosomal dominant connective tissue disorder affecting the cardiovascular, skeletal, and ophthalmic systems. This report aimed to describe a novel genetic background and treatment prognosis of MFS.
    A proband was initially diagnosed with bilateral pathologic myopia and suspected MFS. We performed whole exome sequencing and found a pathogenic nonsense FBN1 mutation in the proband, which confirmed the diagnosis of MFS. Notably, we identified a second pathogenic nonsense mutation in SDHB, which increased the risk of tumours. In addition, the proband karyotype was X trisomy, which may cause X trisomy syndrome. At the 6-month follow-up after posterior scleral reinforcement surgery, the proband\'s visual acuity improved significantly; however, myopia was still progressing.
    We report a rare case of MFS with a X trisomy genotype, a mutation in FBN1 and a mutation in SDHB for the first time, and our findings could be helpful for the clinical diagnosis and treatment of this disease.
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  • 文章类型: Case Reports
    背景:CUL3(OMIM:603136)编码cullin-3,这是泛素E3连接酶的核心成分。现有的医学研究表明,CUL3突变与有或没有自闭症或癫痫发作的神经发育障碍密切相关(神经发育障碍伴自闭症和癫痫发作,OMIM:619239)。然而,已发表的因CUL3基因突变导致的自闭症谱系障碍病例报告数量有限.
    方法:一个四岁的中国女孩出现全身性癫痫,然后表现出发育回归,包括她说话能力的丧失,眼神接触厌恶,和刻板的行为。
    方法:全外显子组测序确定了CUL3基因中的无义突变,c.2065A>T(p。Lys689*);以前没有类似病例报告。最后的诊断是自闭症,癫痫,和电机生长迟缓。
    方法:为了改善患者的生活质量,她接受了为期3个月的运动康复训练和自闭症行为指导治疗。
    结果:患者的运动能力有所改善,自闭症症状改善不明显。
    结论:对于临床医生,伴有癫痫和孤独症谱系障碍的发育退化患者应被建议进行相关基因检测以明确诊断.
    BACKGROUND: CUL3 (OMIM: 603136) encodes cullin-3, a core component of ubiquitin E3 ligase. Existing medical research suggests that CUL3 mutations are closely related to neurodevelopmental disorder with or without autism or seizures (neurodevelopmental disorder with autism and seizures, OMIM: 619239). However, the number of published case reports of autism spectrum disorder due to CUL3 gene mutations is limited.
    METHODS: A four-year-old Chinese girl presented with generalized epilepsy, and then exhibited developmental regression, including loss of her speaking ability, eye contact aversion, and stereotyped behavior.
    METHODS: Whole-exome sequencing identified a nonsense mutation in the CUL3 gene, being c.2065A > T (p.Lys689*); no previous similar case was reported. The final diagnosis was autism, epilepsy, and motor growth retardation.
    METHODS: In order to improve quality of life of the patient, she was provided with exercise rehabilitation training and autism behavioral guidance therapy for 3 months.
    RESULTS: The patient\'s exercise capacity had improved, and improvements in autism symptoms were not obvious.
    CONCLUSIONS: For clinicians, patients with developmental regression accompanied with concurrent epilepsy and autism spectrum disorder should be advised that relevant genetic tests are necessary to clarify the diagnosis.
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