Chromosome Deletion

染色体缺失
  • 文章类型: Journal Article
    鉴于听力损失(HL)的个性化管理和治疗的关键作用,早期进行病因调查,和遗传分析显着有助于确定大多数综合征和非综合征HL病例。知道数百个与HL的综合征关联,关于由于连续基因的微缺失或微重复而导致的基因组疾病中HL的全面数据很少。结合对新患者的描述,该患者具有新的3.7Mb的Xq21关键基因座缺失,我们建议对Xq21缺失综合征患者及其家庭成员的临床发现进行未报道的文献综述.最后,我们提出了连续基因综合征中HL的全面综述,以确认细胞基因组微阵列分析在研究无法解释的HL病因中的作用。
    Given the crucial role of the personalized management and treatment of hearing loss (HL), etiological investigations are performed early on, and genetic analysis significantly contributes to the determination of most syndromic and nonsyndromic HL cases. Knowing hundreds of syndromic associations with HL, little comprehensive data about HL in genomic disorders due to microdeletion or microduplications of contiguous genes is available. Together with the description of a new patient with a novel 3.7 Mb deletion of the Xq21 critical locus, we propose an unreported literature review about clinical findings in patients and their family members with Xq21 deletion syndrome. We finally propose a comprehensive review of HL in contiguous gene syndromes in order to confirm the role of cytogenomic microarray analysis to investigate the etiology of unexplained HL.
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  • 文章类型: Journal Article
    背景:随着产前诊断技术的进步,染色体微缺失和微重复已成为产前诊断的重点。由于7q末端的缺失或重复而导致的7q部分单体或三体是相对罕见的,通常源于携带平衡易位的父母。
    方法:非侵入性产前筛查(NIPT)显示胎儿染色体7q部分缺失和重复。无法确定胎儿是否正常。
    方法:对胎儿羊水样本和父母外周血样本进行常规染色体G显带和染色体微阵列分析(CMA)。
    方法:临床医生对孕妇进行了详细的遗传咨询。
    结果:常规G带分析胎儿核型为46,XY。CMA测试结果显示7q36.1q36.3区中大约7.8Mb的缺失和7q35q36.1区中6.6Mb的重复。父母的核型分析和CMA结果正常,表明一个新的突变。
    结论:CMA分子诊断分析可以有效检测染色体微缺失或微重复,阐明胎儿基因型和临床表型之间的关系,为染色体微缺失重复综合征的产前诊断提供参考。
    BACKGROUND: With advances in prenatal diagnostic techniques, chromosomal microdeletions and microduplications have become the focus of prenatal diagnosis. 7q partial monosomy or trisomy due to a deletion or duplication of the 7q end is relatively rare and usually originates from parents carrying a balanced translocation.
    METHODS: Noninvasive prenatal screening (NIPT) showed a fetus with partial deletion and duplication of chromosome 7q. It was not possible to determine whether the fetus was normal.
    METHODS: Conventional chromosome G-banding and chromosome microarray analysis (CMA) were performed on fetal amniotic fluid samples and parental peripheral blood samples.
    METHODS: The pregnant women were given detailed genetic counseling by clinicians.
    RESULTS: The fetal karyotype was 46, XY on conventional G-banding analysis. The CMA test results showed a deletion of approximately 7.8 Mb in the 7q36.1q36.3 region and a duplication of 6.6Mb in the 7q35q36.1 region. The parents\' karyotype analysis and CMA results were normal, indicating a new mutation.
    CONCLUSIONS: CMA molecular diagnostic analysis can effectively detect chromosomal microdeletions or microduplications, clarify the relationship between fetal genotype and clinical phenotype, and provide a reference for prenatal diagnosis of chromosomal microdeletion-duplication syndrome.
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  • 文章类型: Journal Article
    直到几年前,据认为,Y染色体(mLOY)的逐渐镶嵌丢失是正常的年龄相关过程。然而,现在知道mLOY与男性的多种病理有关,比如心血管疾病,神经退行性疾病,和许多类型的癌症。然而,到目前为止,尚未研究男性产生mLOY的机制。这项任务非常重要,因为它将允许专注于预防或治疗与mLOY相关的疾病的可能方法。另一方面,这将允许更好地理解mLOY作为在人类鉴定的情况下推断男性样本年龄的可能标记。由于上述原因,在这项工作中,对文献进行了全面回顾,提供有关产生mLOY的可能分子机制的最相关信息,以及它对男性健康的影响,以及它可能用作推断年龄的标志。
    Until a few years ago, it was believed that the gradual mosaic loss of the Y chromosome (mLOY) was a normal age-related process. However, it is now known that mLOY is associated with a wide variety of pathologies in men, such as cardiovascular diseases, neurodegenerative disorders, and many types of cancer. Nevertheless, the mechanisms that generate mLOY in men have not been studied so far. This task is of great importance because it will allow focusing on possible methods of prophylaxis or therapy for diseases associated with mLOY. On the other hand, it would allow better understanding of mLOY as a possible marker for inferring the age of male samples in cases of human identification. Due to the above, in this work, a comprehensive review of the literature was conducted, presenting the most relevant information on the possible molecular mechanisms by which mLOY is generated, as well as its implications for men\'s health and its possible use as a marker to infer age.
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  • 文章类型: Journal Article
    18p缺失综合征是最常见的常染色体终末缺失综合征之一,影响到每50,000个活产中就有一个。该综合征具有非特异性临床特征,在患者之间差异很大,并且可能与其他遗传状况重叠。其产前描述极为罕见,因为在怀孕期间通常不存在胎儿表型。三体8p综合征的特点是异质性表型,最常见的成分是心脏畸形,发育和智力延迟。由于受影响胎儿的超声特征不明确,其产前诊断非常罕见。我们提出了一个非常罕见的案例,即在孕中期诊断出多种异常的胎儿,其基因组分析显示18p缺失和8p三体综合征。这是第一种情况,其中DNA突变的组合已在产前进行了描述,而第二种情况通常是这样。这个案例的介绍,以及对所有描述案件的详细审查,旨在扩大有关这种罕见疾病的现有知识,以便将来进行诊断。
    18p deletion syndrome constitutes one of the most frequent autosomal terminal deletion syndromes, affecting one in 50,000 live births. The syndrome has un-specific clinical features which vary significantly between patients and may overlap with other genetic conditions. Its prenatal description is extremely rare as the fetal phenotype is often not present during pregnancy. Trisomy 8p Syndrome is characterized by heterogenous phenotype, with the most frequent components to be cardiac malformation, developmental and intellectual delay. Its prenatal diagnosis is very rare due to the unspecific sonographic features of the affected fetuses. We present a very rare case of a fetus with multiple anomalies diagnosed during the second trimester whose genomic analysis revealed a 18p Deletion and 8p trisomy Syndrome. This is the first case where this combination of DNA mutations has been described prenatally and the second case in general. The presentation of this case, as well as the detailed review of all described cases, aim to expand the existing knowledge regarding this rare condition facilitating its diagnosis in the future.
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  • 文章类型: Journal Article
    20号染色体(20q)长臂的缺失很少见,只有16例报告的患者显示近端间质20q缺失。在20q11.2处的1.62Mb最小临界区域,包括三个基因GDF5,EPB41L1和SAMHD1,被认为是该综合征的原因。主要的临床特征包括生长迟缓,顽固性进食困难与胃食管反流,张力减退和精神运动性发育迟缓。常见的面部畸形,包括三角脸,超端粒,此外还报告了发育不良的鼻翼。这里,我们介绍了5例近侧间质20q缺失的新患者的临床和分子研究结果。我们分析了所有先前报道的20q11.2q12微缺失患者的表型和分子数据,还有我们的五个新案子.我们队列中患者的拷贝数变异分析使我们能够识别20q11.2q12区域中的第二个关键区域,并重新定义最初识别的第一个区域。第一个关键区域在20q11.2处跨越359kb,包含六个MIM基因,包括两个致病基因,GDF5和CEP250。第二个关键区域在20q12跨越706kb,包含四个MIM基因,包括两个致病基因,MAFB和TOP1。我们建议GDF5是产生20q11.2缺失患者表型的主要候选基因。此外,我们假设TOP1是20q12第二个关键区域的潜在候选基因。值得注意的是,我们不能排除参与缺失的其他基因的协同作用的可能性,包括影响两个关键区域的连续基因缺失综合征或位置效应。需要针对近端20q缺失患者的进一步研究来支持我们的假设。
    Deletions of the long arm of chromosome 20 (20q) are rare, with only 16 reported patients displaying a proximal interstitial 20q deletion. A 1.62 Mb minimal critical region at 20q11.2, encompassing three genes GDF5, EPB41L1, and SAMHD1, is proposed to be responsible for this syndrome. The leading clinical features include growth retardation, intractable feeding difficulties with gastroesophageal reflux, hypotonia and psychomotor developmental delay. Common facial dysmorphisms including triangular face, hypertelorism, and hypoplastic alae nasi were additionally reported. Here, we present the clinical and molecular findings of five new patients with proximal interstitial 20q deletions. We analyzed the phenotype and molecular data of all previously reported patients with 20q11.2q12 microdeletions, along with our five new cases. Copy number variation analysis of patients in our cohort has enabled us to identify the second critical region in the 20q11.2q12 region and redefine the first region that is initially identified. The first critical region spans 359 kb at 20q11.2, containing six MIM genes, including two disease-causing genes, GDF5 and CEP250. The second critical region spans 706 kb at 20q12, encompassing four MIM genes, including two disease-causing genes, MAFB and TOP1. We propose GDF5 to be the primary candidate gene generating the phenotype of patients with 20q11.2 deletions. Moreover, we hypothesize TOP1 as a potential candidate gene for the second critical region at 20q12. Of note, we cannot exclude the possibility of a synergistic role of other genes involved in the deletion, including a contiguous gene deletion syndrome or position effect affecting both critical regions. Further studies focusing on patients with proximal 20q deletions are required to support our hypothesis.
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  • 文章类型: Case Reports
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  • 文章类型: Review
    背景:Williams-Beuren综合征(WBS)是一种罕见的遗传性疾病,由染色体7q11.23上相邻基因的半合子微缺失引起。尽管表型在严重程度和表现上具有广泛的异质性,WBS不被认为是癌症发展的诱发因素。目前,血液肿瘤,主要是伯基特淋巴瘤,很少在WBS患者中报告。在这里,我们报道了1例男性WBS患儿T细胞急性淋巴细胞白血病的独特病例.
    方法:本研究回顾性分析此例接受化疗的患者的临床资料。这是一项回顾性研究。
    结果:患者,表现出典型的WBS表型并出现出血点。染色体全基因组芯片分析(CMA)显示7号和9号染色体异常。融合基因STIL-TAL1与BCL11B的突变,还发现了NOTCH1和USP7,它们都与T细胞白血病的发生有关。患者对化疗反应良好。
    结论:据我们所知,这是首例报道的T细胞急性淋巴细胞白血病WBS病例.我们要强调,该患者白血病的发生可能与7q11.23丢失和9p21.3微缺失(包括3个TSG)有关,但WBS与恶性肿瘤的关系尚不清楚.需要进一步的研究来阐明WBS与恶性肿瘤之间的关系。
    BACKGROUND: Williams-Beuren syndrome (WBS) is a rare genetic disorder caused by hemizygous microdeletion of contiguous genes on chromosome 7q11.23. Although the phenotype features extensive heterogeneity in severity and performance, WBS is not considered to be a predisposing factor for cancer development. Currently, hematologic cancers, mainly Burkitt lymphoma, are rarely reported in patients with WBS. Here in, we report a unique case of T-cell acute lymphoblastic leukemia in a male child with WBS.
    METHODS: This retrospective study analyzed the clinical data of this case receiving chemotherapy were analyzed. This is a retrospective study.
    RESULTS: The patient, who exhibited a typical WBS phenotype and presented with hemorrhagic spots. Chromosomal genome-wide chip analysis (CMA) revealed abnormalities on chromosomes 7 and 9. The fusion gene STIL-TAL1 and mutations in BCL11B, NOTCH1, and USP7 have also been found and all been associated with the occurrence of T-cell leukemia. The patient responded well to the chemotherapy.
    CONCLUSIONS: To the best of our knowledge, this is the first reported case of WBS in T-cell acute lymphoblastic leukemia. We want to emphasize that the occurrence of leukemia in this patient might be related to the loss of 7q11.23 and microdeletion of 9p21.3 (including 3 TSGs), but the relationship between WBS and malignancy remains unclear. Further studies are required to clarify the relationship between WBS and malignancy.
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  • 文章类型: Case Reports
    DiGeorge syndrome is associated with microdeletion of chromosome 22q11. Hypoplasia of the thymus, hypoparathyroidism, facial malformations and cardiac defects as well as learning difficulties are typical features of the disease. On the other hand hypocalcemia related to hypoparathyroidism is not present in every patient and can develop later and be persistent or transient and is often masked by the other signs or symptoms. We described a 13-year-old boy diagnosed with DiGeorge syndrome, after a few years of nonspecific signs and symptoms, and a microarray examination performed because myopathy was suspected on the basis of elevated creatine kinase activity. Only after molecular confirmation of DiGeorge syndrome the patient was referred to a pediatric endocrinologist and proper therapy started. Looking back to his medical history, low calcium levels were at least 2 times reported in the medical records, the child had learning difficulties, speech disturbances, and submucosal cleft palate suspicion. In conclusion it is important to educate general practitioners and pediatricians to check the serum calcium levels in patients presenting with nonspecific, muscular signs and symptoms.
    Zespół DiGeorge\'a jest związany z mikrodelecją w chromosomie 22q11. Typowymi cechami tej choroby są hipoplazja grasicy, niedoczynność przytarczyc, dysmorfia twarzy, występowanie wad serca oraz trudności w nauce. Hipokalcemia związana z niedoczynnością przytarczyc występuje tylko u części pacjentów. Może rozwijać się później niż inne objawy, być trwała lub przemijająca, a często zdarza się, że jest maskowana przez inne dolegliwości. W pracy prezentujemy przypadek 13-letniego chłopca, u którego rozpoznanie zespołu DiGeorge\'a ustalono dopiero po kilku latach występowania niespecyficznych objawów. Badanie mikromacierzy zostało wykonane z powodu podejrzenia miopatii, wysuniętego na podstawie podwyższonej aktywności kinazy kreatynowej w badaniach laboratoryjnych. Dopiero po potwierdzeniu zespołu DiGeorge\'a chłopiec został skierowany do endokrynologa dziecięcego i rozpoczął właściwe leczenie. Analiza historii medycznej pacjenta wskazuje, że w badaniach laboratoryjnych małe stężenia wapnia pojawiały się dwukrotnie, chłopiec miał trudności w nauce, opóźniony rozwój mowy, a także był podejrzewany o podśluzówkowy rozszczep podniebienia. Podsumowując – istotne jest, żeby uczulać lekarzy ogólnych oraz lekarzy pediatrów, aby zlecali badanie stężenia wapnia w surowicy u pacjentów z niespecyficznymi objawami ze strony układu mięśniowego.
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  • 文章类型: Review
    目的:我们介绍了胎儿的产前诊断和围产期17q12微缺失,包括胎儿双侧高回声肾脏的HNF1B,出生后有轻度肾脏异常。和文献综述。
    方法:36岁,由于母亲年龄高,初产妇在妊娠17周时接受了羊膜穿刺术。对从未培养的羊膜细胞提取的DNA进行的同时阵列比较基因组杂交(aCGH)分析显示,从头1.38-Mb17q12微缺失包含LHX1和HNF1B。父母没有这样的微删除。产前超声显示双侧高回声肾脏,皮质髓质(CM)分化正常。父母选择继续怀孕,妊娠39周时,一个3180-g的男性婴儿出生。对脐带血DNA的CGH分析显示ARR[GRCh37(hg19)]17q12(34,856,055-36,248,918)×1.0,具有1.393-Mb微缺失,包括MYO19,PIGW,GGNBP2,DHRS11,MRM1,LHX1,AATF,ACACA,TADA2A,DUSP14SYNRG,DDX52和HNF1B。在2岁零4个月时进行随访时,肾脏超声显示双侧肾脏回声增强,CM分化正常,左肾囊肿小。血液检查显示BUN=28mg/dL(正常:5-18mg/dL)和肌酐=0.5mg/dL(正常:0.2-0.4mg/dL)。
    结论:产前诊断中包含LHX1和HNF1B的17q12微缺失可能在胎儿超声下表现出可变的临床谱,并在出生后表现为双侧高回声肾脏和轻度肾脏异常。胎儿高回声肾的产前诊断应引起17q12微缺失综合征的怀疑。
    OBJECTIVE: We present prenatal diagnosis and perinatal findings of 17q12 microdeletion encompassing HNF1B in a fetus with bilateral hyperechogenic kidneys on fetal ultrasound and mild renal abnormality after birth, and a review of the literature.
    METHODS: A 36-year-old, primigravid woman underwent amniocentesis at 17 weeks of gestation because of advanced maternal age. Simultaneous array comparative genomic hybridization (aCGH) analysis on the DNA extracted from uncultured amniocytes showed a de novo 1.38-Mb 17q12 microdeletion encompassing LHX1 and HNF1B. The parents did not have such a microdeletion. Prenatal ultrasound showed bilateral hyperechogenic kidneys with normal corticomedullary (CM) differentiation. The parents elected to continue the pregnancy, and a grossly normal 3180-g male baby was delivered at 39 weeks of gestation. aCGH analysis on the cord blood DNA revealed arr [GRCh37 (hg19)] 17q12 (34,856,055-36,248,918) × 1.0 with a 1.393-Mb microdeletion encompassing the genes of MYO19, PIGW, GGNBP2, DHRS11, MRM1, LHX1, AATF, ACACA, TADA2A, DUSP14, SYNRG, DDX52 and HNF1B. When follow-up at age 2 years and 4 months, the renal ultrasound revealed bilateral increased renal echogenicity with normal CM differentiation and small left renal cysts. The blood test revealed BUN = 28 mg/dL (normal: 5-18 mg/dL) and creatinine = 0.5 mg/dL (normal: 0.2-0.4 mg/dL).
    CONCLUSIONS: 17q12 microdeletion encompassing LHX1 and HNF1B at prenatal diagnosis may present variable clinical spectrum with bilateral hyperechogenic kidneys on fetal ultrasound and mild renal abnormality after birth. Prenatal diagnosis of fetal hyperechogenic kidneys should raise a suspicion of 17q12 microdeletion syndrome.
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  • 文章类型: Review
    背景:常染色体显性遗传非综合征性智力障碍22是一种由ZBTB18基因引起的罕见遗传疾病。这种疾病会影响身体的各个部位,导致智力残疾。值得注意的是,迄今为止仅报告了31例这种疾病。由于症状严重程度可能不同,医生在准确诊断方面可能面临挑战。熟悉这种疾病的症状,以获得正确的诊断和基本的医疗护理是至关重要的。
    方法:有一例6岁男孩甲状腺异常不明的病例报告,全球发育迟缓,脑MRI中白质的异常信号。然而,他没有生长迟缓,小头畸形,call体发育不全,癫痫,或畸形面部特征。临床全外显子组测序揭示了ZBTB18基因中的从头致病性变异(c.187delC,p.Arg403Alafs*60),这是一个以前未报告的网站。这种变体导致肽链合成的过早终止,导致不完整的多肽链。
    方法:常染色体显性遗传的非综合征性智力和残疾22综合征和甲状腺功能障碍。
    方法:康复训练。
    结果:个人在运动技能方面遇到困难,跑步时显得笨拙。他努力表达自己并形成完整的句子,主要依靠手势和指向。
    结论:精神发育迟滞的临床表现,常染色体显性,22型(MRD22)复杂多样。尽管可以根据典型的临床症状做出早期诊断,我们的研究表明,全外显子组测序对于MRD22的诊断是必要的.
    BACKGROUND: Autosomal dominant non-syndromic intellectual disability 22 is a rare genetic disorder caused by the ZBTB18 gene. This disorder affects various parts of the body, leading to intellectual disability. It is noteworthy that only 31 cases of this disorder have been reported thus far. As the symptom severity may differ, doctors may face challenges in diagnosing it accurately. It is crucial to be familiar with this disorder\'s symptoms to receive proper diagnosis and essential medical care.
    METHODS: There is a case report of a 6-year-old boy who had an unexplained thyroid abnormality, global developmental delay, and an abnormal signal of white matter in brain MRI. However, he did not have growth retardation, microcephaly, corpus callosum hypoplasia, epilepsy, or dysmorphic facial features. Clinical whole exome sequencing revealed a de novo pathogenic variant in the ZBTB18 gene (c.1207delC, p. Arg403Alafs*60), which is a previously unreported site. This variant causes the premature termination of peptide chain synthesis, leading to incomplete polypeptide chains.
    METHODS: Autosomal dominant non-syndromic intellectual and disability 22 syndrome and thyroid dysfunction.
    METHODS: Rehabilitation training.
    RESULTS: The individual is experiencing difficulty with their motor skills, appearing clumsier while running. He struggles with expressing themselves and forming complete sentences, relying mostly on gestures and pointing.
    CONCLUSIONS: The clinical presentations of mental retardation, autosomal dominant, type 22 (MRD22) are complicated and varied. Although early diagnosis can be made according to typical clinical symptoms, whole exome sequencing is necessary for diagnosing MRD22, as our study indicates.
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