CTCF

CTCF
  • 文章类型: Review
    CTCF的单等位基因变异导致具有广泛特征的常染色体显性神经发育障碍。包括对大脑的影响,增长,和颅面发育。由于外显子组测序的应用增加,已经确定了越来越多的CTCF相关疾病(CRD)受试者。需要进一步描述CRD的临床谱。这里,我们检查了临床特征,包括面部轮廓,和107名具有确定的CTCF变体的受试者的基因型谱,包括43个新的和64个先前描述的主题。在43个新学科中,报告了23种新的变体。CRD患者的主要临床特征包括智力障碍/发育迟缓(91%)和言语迟缓(65%),电机延迟(53%),喂养困难/未能茁壮成长(66%),眼部异常(56%),肌肉骨骼异常(53%),和行为问题(52%)。还报告了其他先天性异常,但它们都不常见。我们的发现扩展了CRD的基因型和表型谱,这将指导遗传咨询,管理,和对CRD患者的监测护理。此外,Face2Gene工具上新建的面部完形将有助于医生及时识别CRD,并缩短患者的诊断冒险之旅。
    Monoallelic variants of CTCF cause an autosomal dominant neurodevelopmental disorder with a wide range of features, including impacts on the brain, growth, and craniofacial development. A growing number of subjects with CTCF-related disorder (CRD) have been identified due to the increased application of exome sequencing, and further delineation of the clinical spectrum of CRD is needed. Here, we examined the clinical features, including facial profiles, and genotypic spectrum of 107 subjects with identified CTCF variants, including 43 new and 64 previously described subjects. Among the 43 new subjects, 23 novel variants were reported. The cardinal clinical features in subjects with CRD included intellectual disability/developmental delay (91%) with speech delay (65%), motor delay (53%), feeding difficulties/failure to thrive (66%), ocular abnormalities (56%), musculoskeletal anomalies (53%), and behavioral problems (52%). Other congenital anomalies were also reported, but none of them were common. Our findings expanded the genotypic and phenotypic spectrum of CRD that will guide genetic counseling, management, and surveillance care for patients with CRD. Additionally, a newly built facial gestalt on the Face2Gene tool will facilitate prompt recognition of CRD by physicians and shorten a patient\'s diagnostic odyssey.
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  • 文章类型: Journal Article
    在CRC中,由于与结肠镜检查相关的不适,筛查依从性降低,尽管这种方法在灵敏度和特异性方面是金标准。启动子DNA甲基化(低甲基化或超甲基化)与所有CRC阶段相关。研究目标:系统地回顾目前关于已批准的生物标志物的知识,揭示新的潜力,并检查可以提高性能的战术。这项研究是根据系统评价和荟萃分析(PRISMA)指南的首选报告项目进行的;使用修订后的诊断准确性研究质量评估标准(QUADAS-2)评估偏倚风险。WebofScience®核心合集,搜索MEDLINE®和Scopus®数据库,查找在同行评审期刊上发表的具有特定关键词“结直肠癌”的原创文章,\"早期检测\",“早期结直肠癌”,“表观遗传学”,“生物标志物”,“DNA甲基化生物标志物”,“粪便或血液或组织或活检”,\"NDRG4\",\"BMP3\",\"9月9日\",和“SDC2”。根据资格标准,接受了74篇文章进行分析。mSDC2和mSEPT9在研究中经常被评估,单独或一起作为ColoDefense面板测试的一部分-后者具有最大的性能。mBMP3可能不是检测CRC的合适标记。一组CTCF基因的五个甲基化结合位点有望早期特异性检测CRC。通过采用粪便mt-DNA甲基化测试可以提高CRC筛查的依从性和准确性。
    In CRC, screening compliance is decreased due to the experienced discomfort associated with colonoscopy, although this method is the gold standard in terms of sensitivity and specificity. Promoter DNA methylation (hypomethylation or hypermethylation) has been linked to all CRC stages. Study objectives: to systematically review the current knowledge on approved biomarkers, reveal new potential ones, and inspect tactics that can improve performance. This research was conducted according to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines; the risk of bias was evaluated using the revised Quality Assessment of Diagnostic Accuracy Studies criteria (QUADAS-2). The Web of Science® Core Collection, MEDLINE® and Scopus® databases were searched for original articles published in peer-reviewed journals with the specific keywords \"colorectal cancer\", \"early detection\", \"early-stage colorectal cancer\", \"epigenetics\", \"biomarkers\", \"DNA methylation biomarkers\", \"stool or blood or tissue or biopsy\", \"NDRG4\", \"BMP3\", \"SEPT9\", and \"SDC2\". Based on eligibility criteria, 74 articles were accepted for analysis. mSDC2 and mSEPT9 were frequently assessed in studies, alone or together as part of the ColoDefense panel test-the latter with the greatest performance. mBMP3 may not be an appropriate marker for detecting CRC. A panel of five methylated binding sites of the CTCF gene holds the promise for early-stage specific detection of CRC. CRC screening compliance and accuracy can be enhanced by employing a stool mt-DNA methylation test.
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  • 文章类型: Journal Article
    我们希望这个小型评论将激发讨论和新的研究。在这里,我们简要研究了内分泌干扰化学物质(EDC)对大脑和行为的跨代作用及其潜在的表观遗传机制的文献,包括:DNA甲基化,组蛋白修饰,和非编码RNA。我们强调表观遗传修饰需要以协同的方式进行检查,因为它们一起作用于染色质改变转录。接下来,我们将重点介绍我们的一个实验室(VGC)的最新工作。这些数据提供了精子基因组准备转录的新证据。在精子发育中,基因增强子和启动子可用于转录,这些激活基序也在植入前胚胎中发现。因此,受精过程中与转录因子相关的DNA修饰,在原始生殖细胞(PGCs)中,和/或在生殖细胞成熟期间可以传递给后代。我们讨论了该模型对EDC暴露的影响,并推测受精和PGC迁移过程中激素水平的自然变化是否会对大脑和行为产生跨代影响。最后,我们讨论了这种机制如何应用于神经性分化。
    It is our hope this mini-review will stimulate discussion and new research. Here we briefly examine the literature on transgenerational actions of endocrine disrupting chemicals (EDCs) on brain and behavior and their underlying epigenetic mechanisms including: DNA methylation, histone modifications, and non-coding RNAs. We stress that epigenetic modifications need to be examined in a synergistic manner, as they act together in situ on chromatin to change transcription. Next we highlight recent work from one of our laboratories (VGC). The data provide new evidence that the sperm genome is poised for transcription. In developing sperm, gene enhancers and promoters are accessible for transcription and these activating motifs are also found in preimplantation embryos. Thus, DNA modifications associated with transcription factors during fertilization, in primordial germ cells (PGCs), and/or during germ cell maturation may be passed to offspring. We discuss the implications of this model to EDC exposures and speculate on whether natural variation in hormone levels during fertilization and PGC migration may impart transgenerational effects on brain and behavior. Lastly we discuss how this mechanism could apply to neural sexual differentiation.
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