COL11A1

COL11A1
  • 文章类型: Journal Article
    发育性髋关节发育不良(DDH)是一种先天性疾病,影响所有婴儿的2-3%。DDH会增加骨关节炎的风险,在40岁以下的成年人中,占所有全髋关节置换术(THA)的30%,并可能导致生活质量下降。我们的目的是探索DDH的遗传背景,以提高诊断水平。管理和长期结果。
    我们使用了大的,正在进行,纵向Trøndelag健康研究(HUNT)数据库。病例定义基于DDH的ICD-9/-10诊断,或继发于DDH的骨关节炎。使用SAIGE软件进行分析,协变量包括性别,批处理,出生年份和主要成分。我们仅包括具有次要等位基因频率(MAF)≥0.01,R2≥0.8和Hardy-Weinberg平衡(HWE)P值≥0.0001的单核苷酸多态性(SNP)。显著性水平设置为p​<5×10-8。使用METAL软件使用DDH和原发性骨关节炎全基因组关联研究(GWAS)的数据进行荟萃分析。该研究得到了区域伦理委员会的批准。
    分析包括69,500个人,其中408例,和8,531,386个SNP。COL11A1附近的两个SNP与DDH显著相关;rs713162(β​=-0.43,SE=0.07,p=8.4×10-9)和rs6577334(β=-0.43,SE=0.08,p=8.9×10-9)。COL11A1以前与髋臼发育不良和骨关节炎有关。荟萃分析支持先前关于DDH和原发性骨关节炎的GWAS发现。
    这么大,全基因组病例对照研究表明COL11A1和DDH之间存在关联,是研究DDH病因的重要贡献,需要进一步的研究。
    UNASSIGNED: Developmental dysplasia of the hip (DDH) is a congenital condition affecting 2-3% of all infants. DDH increases the risk of osteoarthritis, is the cause of 30 ​% of all total hip arthroplasties (THAs) in adults <40 years of age and can result in loss of life quality. Our aim was to explore the genetic background of DDH in order to improve diagnosis, management and longterm outcome.
    UNASSIGNED: We used the large, ongoing, longitudinal Trøndelag Health Study (HUNT) database. Case definition was based on ICD-9/-10 diagnoses of DDH, or osteoarthritis secondary to DDH. Analyses were performed using SAIGE software, with covariates including sex, batch, birth year and principal components. We included only single nucleotide polymorphisms (SNPs) with minor allele frequency (MAF) ≥ 0.01, R2≥ 0.8 and Hardy-Weinberg equilibrium (HWE) P-value ≥ 0.0001. Significance level was set at p ​< ​5 ​× ​10-8. Meta-analysis using data from DDH and primary osteoarthritis genome-wide association studies (GWASs) was done using METAL software. The study was approved by the regional ethical committee.
    UNASSIGNED: Analysis included 69,500 individuals, of which 408 cases, and 8,531,386 SNPs. Two SNPs near COL11A1 were significantly associated with DDH; rs713162 (β ​= ​-0.43, SE ​= ​0.07, p ​= ​8.4 ​× ​10-9) and rs6577334 (β ​= ​-0.43, SE ​= ​0.08, p ​= ​8.9 ​× ​10-9). COL11A1 has previously been associated with acetabular dysplasia and osteoarthritis. Meta-analysis supported previous GWAS findings of both DDH and primary osteoarthritis.
    UNASSIGNED: This large, genome-wide case-control study indicates an association between COL11A1 and DDH and is an important contribution to investigating the etiology of DDH, with further research needed.
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  • 文章类型: Journal Article
    目的:评估高度近视(HM)与胶原单核苷酸多态性(SNPs)的相关性,XI型,α1(COL11A1)和胶原蛋白,XVIII型,α1(COL18A1)基因在中国汉族人群中的应用。
    方法:本研究共招募869例HM患者和804例对照。使用SNaPshot方法对COL11A1和COL18A1中的五个SNP进行基因分型。基因分型资料采用χ2检验,并通过Haploview软件计算和检查连锁不平衡块结构。
    结果:对COL11A1和COL18A1SNP的等位基因频率进行Bonferroni校正后,在HM病例和对照组之间没有发现统计学上的显着差异(p>0.05)。然而,rs2236475的G等位基因显示出对HM的易感效应(p=0.016,校正后p=0.08,比值比[OR]=1.26).此外,与rs2236475AA和rs2236475AG+AA基因型相比,rs2236475GG基因型携带者患HM的风险增加(p=0.008,OR=1.79,置信区间[95%CI]=1.18-2.64,未校正;p=0.012,OR=1.74,95%CI=1.12-2.57,校正后,分别)。
    结论:我们的结果表明,这两个候选基因的共同多态性不太可能在对HM的遗传易感性中起主要作用。然而,为了避免过滤真正的近视基因,COL11A1和COL18A1在近视发病机制中的作用需要在动物模型和人类遗传流行病学研究中进一步完善.
    OBJECTIVE: To evaluate the association between high myopia (HM) and single nucleotide polymorphisms (SNPs) in collagen, type XI, alpha 1 (COL11A1) and collagen, type XVIII, alpha 1 (COL18A1) genes in a Han Chinese population.
    METHODS: A total of 869 patients with HM and 804 controls were recruited for this study. The genotyping of five SNPs in COL11A1 and COL18A1 was performed using the SNaPshot method. The genotyping data were analyzed using the χ2 test, and the linkage disequilibrium block structure was calculated and examined by Haploview software.
    RESULTS: No statistically significant differences (p > 0.05) were identified between HM cases and controls after a Bonferroni correction for multiple tests in the allele frequencies of COL11A1 and COL18A1 SNPs. However, the G allele of rs2236475 showed a susceptible effect for HM (p = 0.016, corrected p = 0.08, odds ratio [OR] = 1.26). Moreover, the carriers of rs2236475GG genotype displayed an increased risk of HM compared with the rs2236475AA and rs2236475AG+AA genotypes (p = 0.008, OR = 1.79, confidence interval [95% CI] = 1.18-2.64, uncorrected; p = 0.012, OR = 1.74, 95% CI = 1.12-2.57, corrected, respectively).
    CONCLUSIONS: Our results suggested that common polymorphisms in these two candidate genes were unlikely to play major roles in the genetic susceptibility to HM. Nevertheless, to avoid filtering real myopia genes, the role of COL11A1 and COL18A1 in the pathogenesis of myopia requires more refinement in both animal models and human genetic epidemiological studies.
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  • 文章类型: Journal Article
    OBJECTIVE: To investigate the association of PLEKHA7 and COL11A1 with primary angle closure glaucoma, as well as acute and chronic subphenotype, in a Han Chinese population.
    METHODS: A total of 984 cases, including 606 primary angle closure glaucoma (PACG) and 378 primary angle closure (PAC), and 922 normal controls were recruited. Twelve single nucleotide polymorphisms (SNPs) (rs1676486, rs3753841, rs12138977, rs2126642, rs2622848, rs216489, rs1027617, rs366590, rs11024060, rs6486330, rs11024097, and rs11024102) in the PLEKHA7 gene and COL11A12 gene were genotyped. Distributions of allele frequencies were compared between cases and controls as well as in patient subgroups with or without acute attacks.
    RESULTS: Four of the 12 SNPs, including rs1676486 (P = 0.0060) and rs12138977 (P = 0.028) in COL11A1, as well as rs216489 (P = 0.0074) and rs11024102 (P = 0.038) in PLEKHA7, were found to have a statistically significant association with PAC/PACG. In the subgroup analysis, 6 out of 12 SNPs (rs1676486, rs3753841, rs12138977, rs216489, rs11024060, and rs11024102) showed statistically significant differences between acute PAC/PACG cases and controls. However, none of them showed statistically significant differences between chronic PAC/PACG cases and controls.
    CONCLUSIONS: Our study suggests that rs1676486 and rs12138977 in COL11A1 as well as rs216489 and rs11024102 in PLEKHA7 are associated with an increased risk of PAC/PACG in the Han Chinese population, supporting prior reports of the association of COL11A1 and PLEKH7 with angle closure glaucoma. Both COL11A1 and PLEKHA7 were shown to confer significant risk for acute PAC/PACG. Further work is necessary to confirm the importance of COL11A1 and PLEKHA7 in the pathogenesis of glaucoma.
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