Biosynthesis

生物合成
  • 文章类型: Journal Article
    谷氨酸脱羧酶(GAD)催化L-谷氨酸脱羧成γ-氨基丁酸(GABA)。改善GAD的酶学性质对于低成本合成GABA具有重要意义。在这项研究中,利用与乳酸菌GAD同源的酶序列,使用基于序列的蛋白质设计方法设计高度突变的GAD。两个变异的GAD,FcGAD和AncGAD,通过全共识设计和祖先序列重建产生,具有比天然GAD更理想的属性。关于热稳定性,设计的GAD的半衰期比天然GAD高约10°C。FcGAD的生产率明显高于已知的GAD;在大肠杆菌表达系统中可以产生超过250mg/L的纯化酶。在使用26.4gL-谷氨酸和3.0g静息细胞的生产测试中,17.2克GABA可以在一小时内制备,没有净化,在一锅法合成中。
    Glutamate decarboxylase (GAD) catalyses the decarboxylation of L-glutamate to gamma-aminobutyric acid (GABA). Improvement of the enzymatic properties of GAD is important for the low-cost synthesis of GABA. In this study, utilizing sequences of enzymes homologous with GAD from lactic acid bacteria, highly mutated GADs were designed using sequence-based protein design methods. Two mutated GADs, FcGAD and AncGAD, generated by full-consensus design and ancestral sequence reconstruction, had more desirable properties than native GADs. With respect to thermal stability, the half-life of the designed GADs was about 10 °C higher than that of native GAD. The productivity of FcGAD was considerably higher than those of known GADs; more than 250 mg/L of purified enzyme could be produced in the E. coli expression system. In a production test using 26.4 g of l-glutamate and 3.0 g of resting cells, 17.2 g of GABA could be prepared within one hour, without purification, in a one-pot synthesis.
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  • 文章类型: Journal Article
    自由基S-腺苷甲硫氨酸(RaS)酶催化自然界中一些最迷人的转化。迄今为止,在30万以上的会员中,只有约100人被研究,这是安全的假设,大量的新反应和反应机制仍有待阐明。到目前为止,在微生物基因组中发现RaS酶相对容易。然而,为了确定他们进行的反应,产品的详细结构表征是必要的,这一过程仍然是RaS酶研究中的一个重要障碍。我们最近将天然产物的结构阐明与RaS酶学相结合,为这些方法的融合如何导致发现新的天然产物和RaS酶介导的转化提供了概念证明。在这里,我们提供表达的准则,净化,并重建RaS酶的一个亚类,其中包含一个所谓的SPASM结构域,以及使用HR/MSn和NMR研究的组合表征它们催化的反应。这些方法的应用将有助于将来扩大RaS酶的化学和生物合成库。
    Radical S-adenosylmethionine (RaS) enzymes catalyze some of the most fascinating transformations in Nature. With only ~100 of the >300,000 members studied to date, it is safe to assume that a plethora of new reactions and reaction mechanisms remain to be elucidated. It is by now relatively easy to spot RaS enzymes in microbial genomes. However, to determine the reactions that they carry out, detailed structural characterization of the product(s) is necessary, a process that still represents a significant roadblock in the study of RaS enzymes. We have recently combined natural products structural elucidation along with RaS enzymology to provide a proof of concept for how the confluence of these approaches can lead to the discovery of new natural products and RaS enzyme-mediated transformations. Herein, we provide guidelines for expressing, purifying, and reconstituting a subclass of RaS enzymes that contain a so-called SPASM domain, as well as characterizing the reactions that they catalyze using a combination of HR/MSn and NMR investigations. Application of these approaches will aid in expanding the chemical and biosynthetic repertoire of RaS enzymes in the future.
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