Abstract:
This strain was isolated from traditionally (homemade) fermented Lithuanian cherry tomatoes. The genome consists of 55 contigs with a total size of 3,326,119 bp, an N50 of 170738, and a GC% of 44.3 %. According to the COG annotation, most of these proteins were divided into three categories related to transcription (K category: 307), amino acid transport and metabolism (E category: 222), and carbohydrate transport and metabolism (G category: 268). No genes associated with antimicrobial resistance or virulence factors were identified. The data presented here can be used in comparative genomics to identify antimicrobial resistance genes and virulence factors that may be present in relevant Lactobacillus species. PlasmidFinder server revealed the presence of plasmid pR18 (assessment number JN601038) in the genome that has lincomycin resistance, can be transferred from one bacterium to another, and is one of the most common plasmids in the genera Bacillus and Lactobacillus. The draft genome sequence data have been deposited with NCBI under Bioproject under accession number PRJNA947394.
摘要:
该菌株是从传统(自制)发酵的立陶宛樱桃番茄中分离出来的。基因组由55个重叠群组成,总大小为3,326,119bp,N50为170738,GC%为44.3%。根据COG注释,这些蛋白质中的大多数分为与转录相关的三类(K类:307),氨基酸运输和代谢(E类:222),和碳水化合物运输和代谢(G类:268)。没有发现与抗微生物药物耐药性或毒力因子相关的基因。此处提供的数据可用于比较基因组学,以鉴定可能存在于相关乳杆菌物种中的抗微生物抗性基因和毒力因子。PlasmidFinder服务器显示基因组中存在具有林可霉素抗性的质粒pR18(评估号JN601038),可以从一种细菌转移到另一种细菌,是芽孢杆菌属和乳酸菌属中最常见的质粒之一。基因组序列数据草案已在Bioproject下由NCBI保藏,登录号PRJNA947394。