关键词: Desferrioxamine Flaviolin Nonribosomal peptide Polyketide Terpene Type strain

来  源:   DOI:10.1016/j.dib.2024.110611   PDF(Pubmed)

Abstract:
TA4-1 is the type strain of Streptomyces chiangmaiensis. The TA4-1 strain was isolated from a stingless bee (Tetragonilla collina). Here we present the draft genome sequence data of S. chiangmaiensis TA4-1. The Illumina NextSeq 550 sequencer was used to generate paired-end reads from the genomic DNA of the pure culture of S. chiangmaiensis TA4-1. The draft genome sequence of strain TA4-1 consists of 776 contigs with a total size of 9,707,984 base pairs, an N50 of 32,937 base pairs, and a GC content of 69.73 %. Digital DNA-DNA hybridisation (dDDH) and average nucleotide identity (ANI) analysis showed that S. yaanensis CGMCC 4.7035 had the highest dDDH value (32.7 %) and ANIm value (88.50 %) when compared with TA4-1. The presented data indicate the potential for a reference genome sequence in bacterial taxonomy, comparative genomics, and the investigation of bioactive compound biosynthesis in S. chiangmaiensis TA4-1. The draft genome sequence data have been deposited at NCBI under the Bioproject accession number PRJNA680432.
摘要:
TA4-1是新疆链霉菌的类型菌株。TA4-1菌株是从无刺蜜蜂(Tetragonillacollina)中分离的。在这里,我们介绍了清麦TA4-1的基因组序列数据草案。IlluminaNextSeq550测序仪用于从纯培养物的ChiangmaensisTA4-1的基因组DNA产生配对末端读数。菌株TA4-1的基因组序列草案由776个重叠群组成,总大小为9,707,984个碱基对,32,937个碱基对的N50,GC含量为69.73%。数字DNA-DNA杂交(dDDH)和平均核苷酸同一性(ANI)分析表明,与TA4-1相比,山葵CGMCC4.7035具有最高的dDDH值(32.7%)和ANIm值(88.50%)。提供的数据表明细菌分类学中参考基因组序列的潜力,比较基因组学,并对江麦TA4-1生物活性化合物的生物合成进行了研究。基因组序列数据草案已在NCBI以Bioproject登录号PRJNA680432保藏。
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