关键词: Comparative mitogenomics Mustelus Next generation sequencing Taxonomy Triakis

来  源:   DOI:10.1016/j.dib.2024.110280   PDF(Pubmed)

Abstract:
Here, we present, for the first time, the Ion TorrentⓇ next-generation sequencing (NGS) data for five houndsharks (Chondrichthyes: Triakidae), which include Galeorhinus galeus (number of bases pairs (bp) 17,487; GenBank accession number ON652874), Mustelus asterias (16,708; ON652873), Mustelus mosis (16,755; ON075077), Mustelus palumbes (16,708; ON075076), and Triakis megalopterus (16,746; ON075075). All assembled mitogenomes encode 13 protein-coding genes (PCGs), two ribosomal (r)RNA genes, and 22 transfer (t)RNA genes (tRNALeu and tRNASer are duplicated), except for G. galeus which contains 23 tRNA genes where tRNAThr is duplicated. The data presented in this paper can assist other researchers in further elucidating the diversification of triakid species and the phylogenetic relationships within Carcharhiniformes (groundsharks) as mitogenomes accumulate in public repositories.
摘要:
这里,我们呈现,第一次,IonTorrent®下一代测序(NGS)数据为五种鲨鱼(Chondrichthyes:Triakidae),其中包括Galeohinusgaleus(碱基对数(bp)17,487;GenBank登录号ON652874),Mustelusasterias(16,708;ON652873),Mustelusmosis(16,755;ON075077),Musteluspalumbes(16,708;ON075076),和巨翅三重奏(16,746;ON075075)。所有组装的有丝分裂基因组编码13个蛋白质编码基因(PCGs),两个核糖体(r)RNA基因,和22个转移(t)RNA基因(tRNALeu和tRNASer是重复的),除了G.galeus,它包含23个tRNA基因,其中tRNAThr是重复的。本文提供的数据可以帮助其他研究人员进一步阐明triakid物种的多样性以及有丝分裂基因组在公共存储库中积累时Carcharhiniformes(地鲨)内部的系统发育关系。
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