关键词: Conformational rigidity Cytochrome c' Kinetics Nitric oxide Spectroscopy

来  源:   DOI:10.1016/j.bpj.2024.06.026

Abstract:
Cytochromes c\'-α are nitric oxide (NO)-binding heme proteins derived from bacteria that can thrive in a wide range of temperature environments. Studies of mesophilic Alcaligenes xylosoxidans cytochrome c\'-α (AxCP-α) have revealed an unusual NO-binding mechanism involving both heme faces, in which NO first binds to form a distal hexa-coordinate Fe(II)-NO (6cNO) intermediate and then displaces the proximal His to form a proximal penta-coordinate Fe(II)-NO (5cNO) final product. Here we characterize a thermally stable cytochrome c\'-α from thermophilic Hydrogenophilus thermoluteolus (PhCP-α) to understand how protein thermal stability affects NO binding. Electron paramagnetic and resonance Raman spectroscopies reveal the formation of a PhCP-α 5cNO product, with time-resolved (stopped-flow) UV-visible absorbance indicating the involvement of a 6cNO intermediate. Relative to AxCP-α, the rates of 6cNO and 5cNO formation in PhCP-α are ∼11-fold and ∼13-fold lower, respectively. Notably, X-ray crystal structures of PhCP-α in the presence and absence of NO suggest that the sluggish formation of the proximal 5cNO product results from conformational rigidity: the Arg-132 residue (adjacent to the proximal His ligand) is held in place by a salt bridge between Arg-75 and Glu-135 (an interaction not present in AxCP-α or a psychrophilic counterpart). Overall, our data provide fresh insights into structural factors controlling NO binding in heme proteins, including 5cNO complexes relevant to eukaryotic NO sensors.
摘要:
细胞色素c'-α是来自细菌的一氧化氮(NO)结合血红素蛋白,可以在广泛的温度环境中茁壮成长。嗜温的产碱菌木氧化素细胞色素c'-α(AxCP-α)的研究揭示了涉及两个血红素面的不寻常的NO结合机制,其中NO首先结合以形成远端六坐标Fe(II)-NO(6cNO)中间体,然后置换近端His以形成近端五坐标Fe(II)-NO(5cNO)最终产物。在这里,我们表征了来自嗜热嗜氢性嗜热嗜氢细胞色素c'-α(PhCP-α)的热稳定细胞色素c'-α,以了解蛋白质热稳定性如何影响NO结合。电子顺磁性和共振拉曼光谱揭示了PhCP-α5cNO产物的形成,具有时间分辨(停流)UV-可见光吸收,表明涉及6cNO中间体。相对于AxCP-α,PhCP-α中6cNO和5cNO形成的速率分别低11倍和13倍,分别。值得注意的是,在存在和不存在NO的情况下,PhCP-α的X射线晶体结构表明,近端5cNO产物的缓慢形成是由构象刚性引起的:Arg-132残基(与近端His配体相邻)通过Arg-75和Glu-135之间的盐桥(AxCP-α或嗜冷对应物中不存在的相互作用)。总的来说,我们的数据为控制血红素蛋白中NO结合的结构因素提供了新的见解,包括与真核NO传感器相关的5cNO复合物。
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