Mesh : Bacterial Proteins / physiology Binding Sites Biological Evolution DNA-Binding Proteins / physiology Gene Expression Regulation, Bacterial Genome, Bacterial Protein Conformation Streptomyces / physiology Transcription Factors / physiology

来  源:   DOI:10.1016/j.mib.2020.01.019   PDF(Sci-hub)   PDF(Pubmed)

Abstract:
Proteins that regulate transcription often also play an architectural role in the genome. Thus, it has been difficult to define with precision the distinctions between transcription factors and nucleoid-associated proteins (NAPs). Anachronistic descriptions of NAPs as \'histone-like\' implied an organizational function in a bacterial chromatin-like complex. Definitions based on protein abundance, regulatory mechanisms, target gene number, or the features of their DNA-binding sites are insufficient as marks of distinction, and trying to distinguish transcription factors and NAPs based on their ranking within regulatory hierarchies or positions in gene-control networks is also unsatisfactory. The terms \'transcription factor\' and \'NAP\' are ad hoc operational definitions with each protein lying along a spectrum of structural and functional features extending from highly specific actors with few gene targets to those with a pervasive influence on the transcriptome. The Streptomyces BldC protein is used to illustrate these issues.
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