matrix

矩阵
  • 文章类型: Journal Article
    微生物生物膜的细胞外基质传统上被视为将驻留细菌保留在生物膜中的结构支架。此外,在生物膜研究的早期,已经认识到基质在生物膜对抗菌剂和环境应激源的耐受性中的作用。然而,随着研究的进展,很明显,生物膜基质也可以参与细菌迁移等过程,遗传交换,离子捕获和信号。最近,已经积累的证据表明生物膜基质也可以具有催化功能。在这里,我们回顾了有关生物膜基质这一引人入胜的催化作用的基础研究。
    The extracellular matrix of microbial biofilms has traditionally been viewed as a structural scaffold that retains the resident bacteria in the biofilm. Moreover, a role of the matrix in the tolerance of biofilms to antimicrobials and environmental stressors was recognized early in biofilm research. However, as research progressed it became apparent that the biofilm matrix can also be involved in processes such as bacterial migration, genetic exchange, ion capture and signalling. More recently, evidence has accumulated that the biofilm matrix can also have catalytic functions. Here we review foundational research on this fascinating catalytic role of the biofilm matrix.
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  • 文章类型: Journal Article
    尽管空间和营养都在竞争,细菌物种通常共存于结构化中,表面附着的群落称为生物膜。虽然这些社区发挥了重要作用,在生态系统中的广泛作用,是人类感染的媒介,了解多种细菌物种如何组装形成这些群落,以及支持多物种生物膜组成的物理过程仍然是一个活跃的研究领域。使用由铜绿假单胞菌组成的三物种群落模型,大肠杆菌,和粪肠球菌,我们用细胞尺度分辨率显示了占主导地位的社区成员的分散,铜绿假单胞菌,防止竞争排斥的发生,导致这三种物种共存。铜绿假单胞菌bqsS缺失突变体不再经历周期性的质量扩散,导致大肠杆菌的局部竞争性排斥。介绍定期,将非对称扩散行为转化为最小模型,仅由最大生长速率和局部密度参数化,支持这样一种直觉,即有偏见地分散否则占主导地位的竞争对手通常可以允许共存。定植实验表明,WT铜绿假单胞菌在定植新区域方面具有优势,与ΔbqsS相比,铜绿假单胞菌,但以当地对大肠杆菌和粪肠杆菌的竞争力下降为代价。总的来说,我们的实验记录了一个物种对竞争-分散-殖民权衡的调制如何继续影响空间结构生态系统中多物种共存的稳定性。
    Despite competition for both space and nutrients, bacterial species often coexist within structured, surface-attached communities termed biofilms. While these communities play important, widespread roles in ecosystems and are agents of human infection, understanding how multiple bacterial species assemble to form these communities and what physical processes underpin the composition of multispecies biofilms remains an active area of research. Using a model three-species community composed of Pseudomonas aeruginosa, Escherichia coli, and Enterococcus faecalis, we show with cellular-scale resolution that biased dispersal of the dominant community member, P. aeruginosa, prevents competitive exclusion from occurring, leading to the coexistence of the three species. A P. aeruginosa bqsS deletion mutant no longer undergoes periodic mass dispersal, leading to the local competitive exclusion of E. coli. Introducing periodic, asymmetric dispersal behavior into minimal models, parameterized by only maximal growth rate and local density, supports the intuition that biased dispersal of an otherwise dominant competitor can permit coexistence generally. Colonization experiments show that WT P. aeruginosa is superior at colonizing new areas, in comparison to ΔbqsS P. aeruginosa, but at the cost of decreased local competitive ability against E. coli and E. faecalis. Overall, our experiments document how one species\' modulation of a competition-dispersal-colonization trade-off can go on to influence the stability of multispecies coexistence in spatially structured ecosystems.
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  • 文章类型: Journal Article
    虚拟现实(VR)是一项新兴技术,在医学教育中显示出令人难以置信的价值。然而,采用VR作为学习工具的医疗机构需要确保他们选择的沉浸式技术产品具有标准的可用性标准。目前的文献在定义机构应该寻找的具体标准方面是有限的,或者如何在各种VR产品之间进行选择。由于医学教育界几乎没有可用的算法来帮助这一过程,已经开发了一个可重复的矩阵来一次评估多个VR平台,这可以帮助确定医学教育计划的最佳选择。该矩阵是一个10分的评分系统,其中包括研究团队在选择用于医学教育的VR产品时认为的10个最重要的因素。可以定量比较任何两个或更多个VR产品的得分。因此,该矩阵将用作方法框架,以帮助客观地选择评价最高的沉浸式技术平台。参与矩阵开发的研究团队由模拟和技术的副院长组成,模拟和技术总监,和八个医学生。
    Virtual reality (VR) is an emerging technology that has demonstrated incredible value within medical education. However, medical institutions adopting VR as a learning tool need to ensure that the immersive technology product they pick possesses standard usability criteria. The current literature is limited in defining what specific criteria institutions should look for, or how to select between various VR products. Since there have been little to no algorithms available to the medical education community to aid in this process, a reproducible matrix has been developed to evaluate multiple VR platforms at once which can help identify the best option for medical education programs. The matrix is a 10-point scoring system that includes what the research team considered to be the 10 most important factors when selecting a VR product for medical education. The scores of any two or more VR products can be quantitatively compared. Therefore, the matrix is to be used as a methodological framework to help objectively select the highest-rated immersive technology platform. The research team involved in the development of the matrix consisted of an associate dean for simulation and technology, a director of simulation and technology, and eight medical students.
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  • 文章类型: Journal Article
    在本文中,描述了通过应用强化热处理来增强新型铸造金属材料-混合多组分铸铁的摩擦学特性。实验材料是标称组成的铸造合金(5重量%。%W,5wt.%Mo,5wt.%V,10wt。%Cr,2.5重量。%Ti,Fe是余量)补充0.3-1.1wt。C和1.5-2.5重量%。%B(共9种合金)。热处理是油淬火,然后是200°C回火。淬火温度(QT)在900-1200°C的范围内变化,步骤为50°C(在QT下保持2小时)。使用微观结构/磨损表面表征估计QT与微观结构和性能的相关性,差示扫描量热法,硬度测量,和三体磨料磨损测试(使用Al2O3颗粒)。铸态合金具有由初晶和/或共晶碳化硼M2(B,C)5,碳硼化物M(C,B),M7(C,B)3、M3(C、B),和基体(铁素体,马氏体,不同组合和体积分数的珠光体/贝氏体)。一般来说,淬火温度的升高导致硬度逐渐增加(最大为66-67HRC),并且大多数合金的磨损率降低。这是由于淬火时合金的相结构状态发生变化,即,次级碳硼化物沉淀,用马氏体代替铁素体和珠光体/贝氏体。发现磨损率与体积硬度成反比。最大耐磨性归因于QT=1150-1200°C,与铸态相比,合金的磨损率降低了三到六倍。随着QT的增加,合金的磨损率差异降低了三倍。最高的耐磨性归因于具有1.1wt。%C,与参考合金(13wt。%Cr铸铁,66HRC的硬度)。使用根据因子设计程序开发的回归模型,分析了碳和硼对硬度和磨损行为的影响。基于磨损表面表征讨论了磨损机理。
    In this paper, enhancing the tribological characteristics of novel cast metallic materials-hybrid multi-component cast irons-by applying a strengthening heat treatment is described. The experimental materials were the cast alloys of a nominal composition (5 wt.% W, 5 wt.% Mo, 5 wt.% V, 10 wt.% Cr, 2.5 wt.% Ti, Fe is a balance) supplemented with 0.3-1.1 wt.% C and 1.5-2.5 wt.% B (total of nine alloys). The heat treatment was oil-quenching followed by 200 °C tempering. The quench temperature (QT) varied in the range of 900-1200 °C, with a step of 50 °C (with a 2-h holding at QT). The correlation of the QT with microstructure and properties was estimated using microstructure/worn surface characterization, differential scanning calorimetry, hardness measurement, and three-body-abrasive wear testing (using Al2O3 particles). The as-cast alloys had a multi-phase structure consisting of primary and/or eutectic borocarbide M2(B,C)5, carboborides M(C,B), M7(C,B)3, M3(C,B), and the matrix (ferrite, martensite, pearlite/bainite) in different combinations and volume fractions. Generally, the increase in the quenching temperature resulted in a gradual increase in hardness (maximally to 66-67 HRC) and a decrease in the wear rate in most alloys. This was due to the change in the phase-structure state of the alloys under quenching, namely, the secondary carboboride precipitation, and replacing ferrite and pearlite/bainite with martensite. The wear rate was found to be inversely proportional to bulk hardness. The maximum wear resistance was attributed to QT = 1150-1200 °C, when the wear rate of the alloys was lowered by three to six times as compared to the as-cast state. With the QT increase, the difference in the wear rate of the alloys decreased by three times. The highest abrasive resistance was attributed to the alloys with 1.1 wt.% C, which had a 2.36-3.20 times lower wear rate as compared with that of the reference alloy (13 wt.% Cr cast iron, hardness of 66 HRC). The effects of carbon and boron on hardness and wear behavior are analyzed using the regression models developed according to the factorial design procedure. The wear mechanisms are discussed based on worn surface characterization.
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  • 文章类型: Journal Article
    与脊椎动物相比,节肢动物运动的研究明显不足。关键的知识差距与影响节肢动物在栖息地边界运动的因素有关,这对人口动态和基因流动有直接影响。虽然较大的节肢动物物种通常会达到更大的传播距离,并且大规模移动会受到天气条件的影响,这些关系在局部尺度上的适用性仍然不确定。关于这一主题的现有研究不仅很少,而且通常仅限于少数物种或实验室条件。为了解决这个知识差距,我们在比利时的两个自然保护区进行了实地研究,专注于飞行和cursorial(非飞行)节肢动物。在资源贫乏的环境中,捕获并释放了200多种不同的节肢动物物种,允许量化的运动速度和方向。通过分析这些运动变量与形态(体型)以及环境因素(温度和风)之间的关系,我们旨在深入了解驱动节肢动物在自然栖息地边界运动的机制。对于飞行物种来说,运动速度与体型和顺风速度呈正相关。相比之下,个体的运动速度与温度完全正相关。值得注意的是,运动方向偏向于最初捕获节肢动物的植被区域,暗示了向合适栖息地移动的内部动力。在较大的飞行个体和顺风条件下,这种趋势尤其强烈。此外,强烈的逆风阻碍了飞行和cursorial类群向栖息地移动。总之,斑块边界的运动速度和方向取决于体型和主要天气条件,并反映出积极的决策过程。
    Arthropod movement has been noticeably understudied compared to vertebrates. A crucial knowledge gap pertains to the factors influencing arthropod movement at habitat boundaries, which has direct implications for population dynamics and gene flow. While larger arthropod species generally achieve greater dispersal distances and large-scale movements are affected by weather conditions, the applicability of these relationships at a local scale remains uncertain. Existing studies on this subject are not only scarce but often limited to a few species or laboratory conditions. To address this knowledge gap, we conducted a field study in two nature reserves in Belgium, focusing on both flying and cursorial (non-flying) arthropods. Over 200 different arthropod species were captured and released within a circular setup placed in a resource-poor environment, allowing quantification of movement speed and direction. By analysing the relationship between these movement variables and morphological (body size) as well as environmental factors (temperature and wind), we aimed to gain insights into the mechanisms driving arthropod movement at natural habitat boundaries. For flying species, movement speed was positively correlated with both body size and tailwind speed. In contrast, movement speed of cursorial individuals was solely positively related with temperature. Notably, movement direction was biased towards the vegetated areas where the arthropods were originally caught, suggesting an internal drive to move towards suitable habitat. This tendency was particularly strong in larger flying individuals and under tailwind conditions. Furthermore, both flying and cursorial taxa were hindered from moving towards the habitat by strong upwind. In conclusion, movement speed and direction at patch boundaries are dependent on body size and prevailing weather conditions, and reflect an active decision-making process.
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  • 文章类型: Journal Article
    特发性声门下狭窄(ISGS)是一种罕见的上气管纤维化疾病,其病理机制未知。它通常影响成年白人女性患者,导致由进行性瘢痕形成和炎症引起的严重气道收缩,并伴有呼吸困难的临床症状,喘鸣和声音的潜在变化。内镜治疗经常导致复发,而手术切除和重建提供了极好的长期功能结果。这项研究旨在使用单细胞RNA测序来鉴定迄今为止尚未识别的ISGS病理方面。我们的scRNAseq分析揭示了声门下瘢痕组织的细胞组成,包括病理的存在,促纤维化成纤维细胞亚型和施万细胞在促纤维化状态的存在。此外,发现与病理学相关的浆细胞增加.使用扩展的生物信息学分析,我们解码了细胞外基质因子的病理相关变化。我们的数据确定了ISGS中正在进行的纤维化过程,并为成纤维细胞的贡献提供了新的见解。雪旺细胞和浆细胞对ISGS的发病机制。这些知识可能会影响ISGS诊断和治疗新方法的开发。
    Idiopathic subglottic stenosis (ISGS) is a rare fibrotic disease of the upper trachea with an unknown pathomechanism. It typically affects adult Caucasian female patients, leading to severe airway constrictions caused by progressive scar formation and inflammation with clinical symptoms of dyspnoea, stridor and potential changes to the voice. Endoscopic treatment frequently leads to recurrence, whereas surgical resection and reconstruction provides excellent long-term functional outcome. This study aimed to identify so far unrecognized pathologic aspects of ISGS using single cell RNA sequencing. Our scRNAseq analysis uncovered the cellular composition of the subglottic scar tissue, including the presence of a pathologic, profibrotic fibroblast subtype and the presence of Schwann cells in a profibrotic state. In addition, a pathology-associated increase of plasma cells was identified. Using extended bioinformatics analyses, we decoded pathology-associated changes of factors of the extracellular matrix. Our data identified ongoing fibrotic processes in ISGS and provide novel insights on the contribution of fibroblasts, Schwann cells and plasma cells to the pathogenesis of ISGS. This knowledge could impact the development of novel approaches for diagnosis and therapy of ISGS.
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  • 文章类型: Journal Article
    在护理点制备自体富血小板血浆(PRP)制剂。离心细胞密度分离将新鲜的血液单位隔离为三个主要部分:缺乏血小板的血浆(PPP)部分,富含血小板的地层(血小板浓缩物),和可变的白细胞生物制剂和红细胞部分。自体血小板浓缩物的使用促进了加速和支持可导致组织修复的许多细胞活动的生物潜力。组织再生,伤口愈合,and,最终,功能和结构修复。通常,PRP制备后,PPP部分被丢弃。PPP的一个不太为人所知但同样重要的特征是特定的生长因子(GF)在PRP中并不大量存在,因为它们位于血小板α颗粒之外。准确地说,胰岛素样生长因子-1(IGF-1)和肝细胞生长因子(HGF)主要存在于PPP组分中。除了它们作为血管生成激活剂的作用外,这些基于血浆的GFs也可以抑制炎症和纤维化,它们促进角质形成细胞迁移并支持组织修复和伤口愈合。此外,众所周知,PPP存在外泌体和其他大囊泡,发挥细胞-细胞通信和细胞信号传导。新开发的超滤技术结合了PPP处理方法,通过消除,以快速有效的方式,等离子水,细胞因子,分子,和分子量(重量)小于纤维孔径的血浆蛋白。因此,功能性总蛋白的活的和粘稠的蛋白质浓缩物,像纤维蛋白原一样,白蛋白,并产生α-2-巨球蛋白。将小体积的高血小板浓缩物与小体积的高度浓缩的富含蛋白质的PPP合并产生富含蛋白质的,富血小板血浆(PR-PRP)生物制剂。蛋白质活化后,主要是纤维蛋白原,PR-PRP矩阵保留并促进入侵的常驻细胞之间的相互作用,像巨噬细胞一样,成纤维细胞,和间充质干细胞(MSCs),以及嵌入的浓缩PRP细胞和分子。施用的PR-PRP生物制剂最终将经历纤维蛋白溶解,导致保留在PR-PRP基质中直到基质溶解的浓缩细胞和分子的持续释放。我们将讨论PR-PRP基质的独特生物学和组织修复和再生特性。
    Autologous platelet-rich plasma (PRP) preparations are prepared at the point of care. Centrifugation cellular density separation sequesters a fresh unit of blood into three main fractions: a platelet-poor plasma (PPP) fraction, a stratum rich in platelets (platelet concentrate), and variable leukocyte bioformulation and erythrocyte fractions. The employment of autologous platelet concentrates facilitates the biological potential to accelerate and support numerous cellular activities that can lead to tissue repair, tissue regeneration, wound healing, and, ultimately, functional and structural repair. Normally, after PRP preparation, the PPP fraction is discarded. One of the less well-known but equally important features of PPP is that particular growth factors (GFs) are not abundantly present in PRP, as they reside outside of the platelet alpha granules. Precisely, insulin-like growth factor-1 (IGF-1) and hepatocyte growth factor (HGF) are mainly present in the PPP fraction. In addition to their roles as angiogenesis activators, these plasma-based GFs are also known to inhibit inflammation and fibrosis, and they promote keratinocyte migration and support tissue repair and wound healing. Additionally, PPP is known for the presence of exosomes and other macrovesicles, exerting cell-cell communication and cell signaling. Newly developed ultrafiltration technologies incorporate PPP processing methods by eliminating, in a fast and efficient manner, plasma water, cytokines, molecules, and plasma proteins with a molecular mass (weight) less than the pore size of the fibers. Consequently, a viable and viscous protein concentrate of functional total proteins, like fibrinogen, albumin, and alpha-2-macroglobulin is created. Consolidating a small volume of high platelet concentrate with a small volume of highly concentrated protein-rich PPP creates a protein-rich, platelet-rich plasma (PR-PRP) biological preparation. After the activation of proteins, mainly fibrinogen, the PR-PRP matrix retains and facilitates interactions between invading resident cells, like macrophages, fibroblast, and mesenchymal stem cells (MSCs), as well as the embedded concentrated PRP cells and molecules. The administered PR-PRP biologic will ultimately undergo fibrinolysis, leading to a sustained release of concentrated cells and molecules that have been retained in the PR-PRP matrix until the matrix is dissolved. We will discuss the unique biological and tissue reparative and regenerative properties of the PR-PRP matrix.
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