{Reference Type}: Journal Article
{Title}: PMart Web Application: Marketplace for Interactive Analysis of Panomics Data.
{Author}: Stratton KG;Claborne DM;Degnan DJ;Richardson RE;White AM;McCue LA;Webb-Robertson BM;Bramer LM;
{Journal}: J Proteome Res
{Volume}: 23
{Issue}: 8
{Year}: 2024 Aug 2
{Factor}: 5.37
{DOI}: 10.1021/acs.jproteome.3c00512
{Abstract}: PMart is a web-based tool for reproducible quality control, exploratory data analysis, statistical analysis, and interactive visualization of 'omics data, based on the functionality of the pmartR R package. The newly improved user interface supports more 'omics data types, additional statistical capabilities, and enhanced options for creating downloadable graphics. PMart supports the analysis of label-free and isobaric-labeled (e.g., TMT, iTRAQ) proteomics, nuclear magnetic resonance (NMR) and mass-spectrometry (MS)-based metabolomics, MS-based lipidomics, and ribonucleic acid sequencing (RNA-seq) transcriptomics data. At the end of a PMart session, a report is available that summarizes the processing steps performed and includes the pmartR R package functions used to execute the data processing. In addition, built-in safeguards in the backend code prevent users from utilizing methods that are inappropriate based on omics data type. PMart is a user-friendly interface for conducting exploratory data analysis and statistical comparisons of omics data without programming.