%0 Journal Article %T Time-resolved fate mapping identifies the intestinal upper crypt zone as an origin of Lgr5+ crypt base columnar cells. %A Capdevila C %A Miller J %A Cheng L %A Kornberg A %A George JJ %A Lee H %A Botella T %A Moon CS %A Murray JW %A Lam S %A Calderon RI %A Malagola E %A Whelan G %A Lin CS %A Han A %A Wang TC %A Sims PA %A Yan KS %J Cell %V 187 %N 12 %D 2024 Jun 6 %M 38848677 %F 66.85 %R 10.1016/j.cell.2024.05.001 %X In the prevailing model, Lgr5+ cells are the only intestinal stem cells (ISCs) that sustain homeostatic epithelial regeneration by upward migration of progeny through elusive upper crypt transit-amplifying (TA) intermediates. Here, we identify a proliferative upper crypt population marked by Fgfbp1, in the location of putative TA cells, that is transcriptionally distinct from Lgr5+ cells. Using a kinetic reporter for time-resolved fate mapping and Fgfbp1-CreERT2 lineage tracing, we establish that Fgfbp1+ cells are multi-potent and give rise to Lgr5+ cells, consistent with their ISC function. Fgfbp1+ cells also sustain epithelial regeneration following Lgr5+ cell depletion. We demonstrate that FGFBP1, produced by the upper crypt cells, is an essential factor for crypt proliferation and epithelial homeostasis. Our findings support a model in which tissue regeneration originates from upper crypt Fgfbp1+ cells that generate progeny propagating bi-directionally along the crypt-villus axis and serve as a source of Lgr5+ cells in the crypt base.