%0 Journal Article
%T Protocol for generating customizable and reproducible plots of sequencing coverage data using the seqNdisplayR package.
%A Lykke-Andersen S
%A Rouvière JO
%A Schmid M
%A Gockert M
%A Jensen TH
%J STAR Protoc
%V 5
%N 2
%D 2024 Jun 21
%M 38502686
暂无%R 10.1016/j.xpro.2024.102960
%X The widespread usage of next-generation sequencing methods for functional genomics studies requires standardized tools for consistent visualization of the associated data. Here, we present seqNdisplayR, an R package for plotting standard sequencing data coverage within a genomic region of interest in a customizable and reproducible manner. We describe steps for installing software, preparing data files, choosing options, and plotting data. This tool is readily available for users with no prior experience with R through the "Shiny app" interface. For complete details on the use and execution of this protocol, please refer to Lykke-Andersen et al.,1 Gockert et al.,2 and Rouviere et al.3.