%0 Journal Article
%T Alview: Portable Software for Viewing Sequence Reads in BAM Formatted Files.
%A Finney RP
%A Chen QR
%A Nguyen CV
%A Hsu CH
%A Yan C
%A Hu Y
%A Abawi M
%A Bian X
%A Meerzaman DM
%J Cancer Inform
%V 14
%N 0
%D 2015
%M 26417198
暂无%R 10.4137/CIN.S26470
%X The name Alview is a contraction of the term Alignment Viewer. Alview is a compiled to native architecture software tool for visualizing the alignment of sequencing data. Inputs are files of short-read sequences aligned to a reference genome in the SAM/BAM format and files containing reference genome data. Outputs are visualizations of these aligned short reads. Alview is written in portable C with optional graphical user interface (GUI) code written in C, C++, and Objective-C. The application can run in three different ways: as a web server, as a command line tool, or as a native, GUI program. Alview is compatible with Microsoft Windows, Linux, and Apple OS X. It is available as a web demo at https://cgwb.nci.nih.gov/cgi-bin/alview. The source code and Windows/Mac/Linux executables are available via https://github.com/NCIP/alview.