关键词: Amber maximum-likelihood molecular dynamics protein structure refinement

Mesh : Proteins / chemistry Molecular Dynamics Simulation Crystallography, X-Ray Protein Conformation Macromolecular Substances / chemistry Software Models, Molecular

来  源:   DOI:10.1107/S2052252524005803   PDF(Pubmed)

Abstract:
The manuscript `Modeling a unit cell: crystallographic refinement procedure using the biomolecular MD simulation platform Amber\' presents a novel protein structure refinement method claimed to offer improvements over traditional techniques like Refmac5 and Phenix. Our re-evaluation suggests that while the new method provides improvements, traditional methods achieve comparable results with less computational effort.
摘要:
手稿“单位细胞建模:使用生物分子MD模拟平台Amber的晶体学细化程序”提出了一种新颖的蛋白质结构细化方法,声称可以对Refmac5和Phenix等传统技术进行改进。我们的重新评估表明,虽然新方法提供了改进,传统方法以更少的计算量获得可比的结果。
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