关键词: Illumina sequencing Pseudomonas aeruginosa Salmonella enterica multidrug resistance sequencing depth short read shotgun metagenomics simulated community

来  源:   DOI:10.1128/mra.00375-24

Abstract:
Paired-end short reads of Illumina HiSeq, MiSeq, and NovaSeq of simulated bacterial communities from fresh spinach and surface water were generated in silico at various sequencing depths. Multidrug-resistant Salmonella enterica serotype Indiana was included in the spinach community, while the water community contained multidrug-resistant Pseudomonas aeruginosa.
摘要:
IlluminaHiSeq的配对短读,MiSeq,和NovaSeq的模拟细菌群落来自新鲜菠菜和地表水在不同测序深度的计算机上产生。多药耐药的肠道沙门氏菌血清型印第安纳州被纳入菠菜社区,而水体中含有多重耐药的铜绿假单胞菌。
公众号