关键词: cis-regulatory sequences gene genome annotation transposable element tunicates

Mesh : Animals Antisense Elements (Genetics) Chromosome Mapping Genes, Overlapping Genetic Loci Genome Genomics Guidelines as Topic Phylogeny Terminology as Topic Transcription, Genetic Urochordata / classification genetics

来  源:   DOI:10.1002/dvg.22822   PDF(Sci-hub)

Abstract:
Tunicates are invertebrate members of the chordate phylum, and are considered to be the sister group of vertebrates. Tunicates are composed of ascidians, thaliaceans, and appendicularians. With the advent of inexpensive high-throughput sequencing, the number of sequenced tunicate genomes is expected to rise sharply within the coming years. To facilitate comparative genomics within the tunicates, and between tunicates and vertebrates, standardized rules for the nomenclature of tunicate genetic elements need to be established. Here we propose a set of nomenclature rules, consensual within the community, for predicted genes, pseudogenes, transcripts, operons, transcriptional cis-regulatory regions, transposable elements, and transgenic constructs. In addition, the document proposes guidelines for naming transgenic and mutant lines.
摘要:
被膜是脊索门的无脊椎动物成员,被认为是脊椎动物的姐妹群。短裙由海鞘组成,thaliaceans,和阑尾炎。随着廉价的高通量测序技术的出现,被膜基因组测序的数量预计将在未来几年内急剧增加。为了促进被膜内的比较基因组学,在被膜动物和脊椎动物之间,需要建立被膜遗传元件命名的标准化规则。在这里,我们提出了一套命名规则,社区内的共识,对于预测的基因,假基因,成绩单,操纵子,转录顺式调控区,转座因子,和转基因构建体。此外,该文件提出了命名转基因和突变系的指南。
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